Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq222 147 3e-30 seq32 100 3e-16 seq34 86.0 7e-12 >seq222 Length=84561 Score = 147 bits (162), Expect = 3e-30 Identities = 508/782 (65%), Gaps = 28/782 (4%) Strand=Plus/Plus Query 114463 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 114522 |||||| || || |||||||| || || || | ||||| || |||||||| | Sbjct 74374 AGGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAG 74433 Query 114523 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 || ||||| || | || | ||| |||||||||| | | || || ||| Sbjct 74434 GATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCG 74493 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 ||| || | ||||||||| |||||||| || || |||||||| | || | | || || Sbjct 74494 GTTGCAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGAT 74553 Query 114643 AGCCTTCCAGACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGT 114698 || ||| || | || | ||| | | | | ||| || |||||||| ||||| Sbjct 74554 GGCAAACCA--CAGCTGCTG--GGCGCGGATCGTCTTGCGCGCACGCCCCTCGCGCTCGT 74609 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 | |||||||| |||||||| || ||| | || | || || || |||| | Sbjct 74610 AGCGCGTGTAGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGT 74669 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 ||||| ||||| ||||| | || || |||| || |||| |||||||||||| || Sbjct 74670 TGGGGCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGA 74729 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 114878 ||| | || ||| | ||||| ||| | || || | ||| || || |||| Sbjct 74730 CCCACATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGCA 74789 Query 114879 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 114938 ||| | ||||| | || || |||||||| || |||||||| | || | | ||||| Sbjct 74790 GCTCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCT 74849 Query 114939 TACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTG 114995 | || | || |||||| || || | ||| ||| | ||||| ||||| ||||| | Sbjct 74850 TGCGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGG 74909 Query 114996 GAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACAT 115055 | | ||| || | || ||| || || || || ||| || |||| | || | Sbjct 74910 GTACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGT 74969 Query 115056 CATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 115115 | || ||| || || || || || || ||| || || ||||||||| |||| Sbjct 74970 CGTGAATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCG 75029 Query 115116 TGCCGTAGATCCCGTCGA-----TCG-AG---TCACCCTT-ATTTGCGATAAGGAAGC-- 115163 || | || || || |||| ||| || || ||||| || ||| | ||||||| Sbjct 75030 TGTCATAAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGC-ACCAGGAAGCAC 75088 Query 115164 -AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 115222 |||| ||| || || | || || |||| ||||||||| || || | |||||| || Sbjct 75089 GAGCT---CATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTG 75145 Query 115223 AA 115224 || Sbjct 75146 AA 75147 >seq32 Length=161680 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||||||||| || |||||||| ||||| || ||| || || Sbjct 59411 GCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTGAGCCCC 59470 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || || || || | |||||| || || || ||||| |||||||| ||||| Sbjct 59471 GGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAAAAGATG 59530 Query 126167 CCCTCCAC 126174 ||||| || Sbjct 59531 CCCTCGAC 59538 >seq34 Length=156822 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 || |||| ||||| || ||||| |||| || ||| | || ||||| |||| Sbjct 79597 AGGTGCTGGTTGACGACGGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAG 79656 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| |||||||||||||| ||||| |||| ||| ||| |||| ||| ||||||||| Sbjct 79657 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCCGTGGGCATG 79716 Query 114014 GGTGCCA 114020 || |||| Sbjct 79717 GGCGCCA 79723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597302152921200