Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1357 86.0 6e-12 seq589 84.2 2e-11 seq678 82.4 8e-11 >seq1357 Length=27981 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || || | ||||||| |||| || ||||||||||| || | ||| Sbjct 4170 TTCTGAATGTTGTAGTCAGCAAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGATG 4229 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| || || |||||| Sbjct 4230 AGGCGCTGCTGGTCCGGGGGGATTCCT 4256 >seq589 Length=52745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| || || || |||||||| || |||| |||||| |||| Sbjct 25589 AGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCGTCC 25530 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || || |||||||| ||| | ||||||||||||||||| || || || ||| Sbjct 25529 TCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCT 25479 >seq678 Length=48865 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318 || |||||||| || || | ||||| |||| |||||||||||||||||| | || ||| Sbjct 42553 TGGATGTTGTAGTCGGCCAGGGTGCAGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGC 42612 Query 64319 CGCTGCTGGTCGGGAGGAAT 64338 ||||||||||||| ||||| Sbjct 42613 CGCTGCTGGTCGGCCGGAAT 42632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601768091600