Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq222 226 3e-54 seq34 125 7e-24 >seq222 Length=84561 Score = 226 bits (250), Expect = 3e-54 Identities = 505/751 (67%), Gaps = 13/751 (2%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG--- 93954 || || || |||||| | || || ||| || |||||| ||||| |||||| || Sbjct 75132 CCCACGCTCTTCAACTCTGGCACGCCGCGCCCTCAGATGAGCTCGTGCTTCCTGGTGCAC 75073 Query 93955 ACGAAC----AAGGC--CGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCG 94008 | ||| | ||| |||| |||| || |||| |||| ||||| || || ||| Sbjct 75072 ATGAAGGGCGATGGCTGCGACAGCATCGAGGGCATTTATGACACGCTCAAAGAGTGCGCG 75013 Query 94009 ACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGT 94068 ||| || || ||||||| || ||||| | | |||||| | ||||||| || Sbjct 75012 GTCATTTCCAAGAACGCGGGTGGCATCGGCCTGTCCATTCACGACATCCGTGCCACCGGC 74953 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 ||||| |||||||| ||||| ||||| ||||||||| |||| || ||||| || ||||| Sbjct 74952 TCCTATATCCGCGGCACCAACGGCACGTCCAACGGCATCGTACCCATGCTGCGCGTCTTT 74893 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 ||| || ||||||| |||||||||||||| || || | | | ||||| | || || | Sbjct 74892 AACGACACGGCGCGTTACGTGGACCAGGGGGGCGGAAAGCGCAAGGGGGCGTTTGCCATT 74833 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || || |||||||||||||| ||| | | |||||||| ||||| ||||||||||| Sbjct 74832 TACCTGGAGCCCTGGCACGCTGACATTTTTGACTTCATCGAGCTGCGCAAGAACCACGGG 74773 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || | | | || | ||| | ||| || | ||||| ||||| || ||| Sbjct 74772 AAAGAGGAGTCGCGCGCGCGGGACTTGTTCCTTGCCATGTGGGTCAACGACCTCTTCATG 74713 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 | || |||||| | | | ||| || ||||| ||||| || || ||||| Sbjct 74712 CAGCGGGTCGAGGCGGATGCGGAGTGGTCGCTCTTTTGCCCCAACGAGGCGCCTGGACTA 74653 Query 94369 TCCGAC-GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCA 94426 | ||| | | | | || | ||||| | || | || |||| | ||| |||| Sbjct 74652 GCGGACTGCTGGGGCGACGAG-TTTGAGCGGCTCTACACGCGCTACG-AGCGCGAGGGGC 74595 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | ||| || || | |||||||| | ||| |||| | ||| | | Sbjct 74594 GTGCGCGCAAGACGATCCGCGCCCAGCAGCTGTGGTTTGCCATCCTGGATGCGCAGATCG 74535 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||||||||| || ||||| | | |||||| || |||| |||| ||||||||| | Sbjct 74534 AGACGGGTACCCCGTACATGCTATACAAGGATTCCTGCAACCGCAAGAGCAACCAGCAAC 74475 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || |||||| || || || ||||| ||||| ||||||| || || | Sbjct 74474 ATCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCCTCGAGTACACCAGCCCCG 74415 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 |||||| || || || ||||||| ||||| Sbjct 74414 ACGAGACGGCGGTCTGCAACCTGGCGTCCAT 74384 Score = 179 bits (198), Expect = 4e-40 Identities = 242/332 (73%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 95044 GACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTG 95103 ||||||||||| || ||||| || || ||||| || ||| ||||||| ||| Sbjct 73932 GACTGGGAAGCCCTGCGCGCCGACATTGCAGCGCACGGGCTGCGCAACTCGCTGCTGGTG 73873 Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || |||||||| || || || ||| |||||||||||||||||| ||||||||||| || Sbjct 73872 GCTCCCATGCCGACCGCTTCGACGTCGCAGATCCTTGGCAACACGGAGTCGTTCGAGCCT 73813 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | |||| |||| | ||| |||| || ||| | || || ||| |||| ||||| | Sbjct 73812 TACACCAGCAACATCTACGCGCGGCGCGTCCTCTCTGGCGAGTTCACCGTTGTCAACTCG 73753 Query 95224 CACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTG 95283 ||||| || | |||||||| || | |||| | ||| | | | ||||||| ||| Sbjct 73752 CACCTGCTTCATGACCTGACTTCGCAGGGTCTCTGGAATCCCGCGATCAAGAATGCACT- 73694 Query 95284 CTACGC-GCCAACGGCTCCGT-CCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGC 95341 | ||| || |||||| ||| ||| |||| || | || |||||||| ||||| || Sbjct 73693 CATCGCTGCGAACGGCAGCGTGGCAG-ACATTCCTGAGATCTCGGAGGACCTCAAGCAGC 73635 Query 95342 TCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 ||||||| ||||| ||||||||| ||||||| Sbjct 73634 TCTACAAAACCGTCTGGGAGATCAAGCAGCGC 73603 >seq34 Length=156822 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| ||| ||| ||||||| ||||| ||||||||||||||| ||| |||||| Sbjct 79748 CACGGCGTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACGGCCAGCACCAGCCAGATC 79689 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| || || |||| |||||||||| | ||| | || ||||| Sbjct 79688 CTGGGCAACAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGCTG 79629 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 | || || ||| ||||| ||||| ||||||| || | ||||||| |||| || Sbjct 79628 TCGGGCGAGTTCACCGTCGTCAACCAGCACCTGCTGCACGACCTGAACCGCATGGGCGTC 79569 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTG 95283 ||| | | | | |||||||| | ||| Sbjct 79568 TGGAGCGCCGACCTCAAGAACGAGCTG 79542 Score = 114 bits (126), Expect = 1e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 ||||| || || || ||||| || ||| |||| ||| ||||| || || | || Sbjct 81155 TGGAGCCTGTTCTGCCCCAACGAGTGTGCCGGCCTGGCCGACAGCTGGGGCGAGAAGTTC 81096 Query 94393 GAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGG 94452 || || |||| ||||| || |||||||||||| | || || || | Sbjct 81095 GAGGAGCTGTACAACAAGTACGAGTCCGAGGGCAAGGCCAAGCGCGTGGTGCGCGCGCAG 81036 Query 94453 AAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTC 94512 |||||||| ||| |||| | |||||||||||||| | |||||||| ||| | Sbjct 81035 CAGCTGTGGTTCGCCATCCTGGAGGCCCAGGTGGAGACGGGCAACCCCTACATGCTGTAC 80976 Query 94513 AAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAAT 94572 |||||| | ||||| |||| |||||||||| |||| || |||||| |||| || Sbjct 80975 AAGGACGCCTGCAACGGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCTCCAAC 80916 Query 94573 CTGTGCACCGAGATTGTCGAGTATAC 94598 |||||||||||||| ||||||| || Sbjct 80915 CTGTGCACCGAGATCATCGAGTACAC 80890 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 94142 GCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCT 94201 |||| ||||||||||| || || | | | ||||| | ||||| |||| | ||||||| Sbjct 81568 GCTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATGGAGCCCT 81509 Query 94202 GGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA 94261 ||||||| |||||| | ||| | || ||||| |||||||||||||| || || | Sbjct 81508 GGCACGCTGACGTGTTTGACTTCCTGGAGCTGCGCAAGAACCACGGCAAGGAGGAGGCGC 81449 Query 94262 GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | ||| | ||||||||||||| || ||| | || ||||| || |||| Sbjct 81448 GCGCCCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGA 81401 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 93998 AGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTAC 94057 |||| || ||| |||||| || ||| || || ||||| | ||||| | | | Sbjct 81902 AGGAGTGCGCGGTCATCTCGAAGAGCGCCGGCGGCATCGGCCTGTCGATCCACTGCATCC 81843 Query 94058 GTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGC 94117 | |||| || || ||||||||||| ||||| || ||||||||||| |||| || |||| Sbjct 81842 GCGCCACCGGGTCGTACATCCGCGGCACCAACGGTACCTCCAACGGTATCGTGCCCATGC 81783 Query 94118 TCCGGGTCTTCAACAACGCGGCGCG 94142 | || ||||||||| || | ||||| Sbjct 81782 TGCGCGTCTTCAACGACACCGCGCG 81758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494680591964400