Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq222 297 2e-75 seq3574 86.0 6e-12 seq34 82.4 8e-11 >seq222 Length=84561 Score = 297 bits (328), Expect = 2e-75 Identities = 613/906 (68%), Gaps = 27/906 (3%) Strand=Plus/Plus Query 153574 CGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG 153633 ||||| ||||||||| | ||||| |||||||| || ||||| |||||||| |||| Sbjct 74358 CGACGACGACGCATCGAGGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGG 74417 Query 153634 CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTT 153693 | | |||||| | |||||| | ||||||||||||||| || ||| ||||| || || Sbjct 74418 GGCTGGTGTACTCGAGGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTT 74477 Query 153694 GCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA 153753 |||| ||||| ||||| ||||| | || ||| | ||||||||||| || ||||||| Sbjct 74478 GCTGGTTGCTCTTGCGGTTGCAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGA 74537 Query 153754 CTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGC 153810 |||| || | ||| ||||| ||| | ||| || || | | || || | Sbjct 74538 TCTGCGCATCCAGGATGGCAAACC---ACAGCTGCTGGGCGCGGATCGTCTTGCGCGCAC 74594 Query 153811 GGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGA 153870 | ||||||| |||||| ||| ||| || ||||||||||||||||| ||||||| || | Sbjct 74595 GCCCCTCGCGCTCGTAGCGCGTGTAGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTA 74654 Query 153871 GGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCA 153930 | || || || | || || | ||||||||| | || || | ||| || ||| Sbjct 74655 GTCCAGGCGCCTCGTTGGGGCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCA 74714 Query 153931 TGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTC---CG 153987 |||| || || ||||| | || | | ||| ||||| | ||||| | Sbjct 74715 TGAAGAGGTCGTTGACCCACATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCC 74774 Query 153988 CGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGT 154047 || | ||||| ||| | || | | | | ||||| ||||||||||| || | || Sbjct 74775 CGTGGTTCTTGCG---CAGCTCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGT 74831 Query 154048 AGACGGCCAGGGCACCTTTACGCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGT 154104 | | ||| | || || || ||||||||| ||||| || |||| ||| || | | || Sbjct 74832 AAATGGCAAACGCCCCCTTGCGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGT 74891 Query 154105 TGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGC 154164 | |||||||||| ||||||| | | |||| | | ||||||||||| ||| | | Sbjct 74892 TAAAGACGCGCAGCATGGGTACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGG 74951 Query 154165 TGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGG 154224 |||| ||| || | | || | | | ||| ||||| || ||| ||| || ||| Sbjct 74952 AGCCGGTGGCACGGATGTCGTGAATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGA 75011 Query 154225 CAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCC----- 154279 | ||||| || ||||| || ||||| |||||||| ||| || |||| Sbjct 75012 CCGCGCACTCTTTGAGCGTGTCATAAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCA 75071 Query 154280 ----GAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGG 154335 | || ||| ||||| | ||| || || |||| || | ||||| |||| Sbjct 75072 TGTGCACCAGGAAGCACGAGCTCATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGG 75131 Query 154336 GACTCGCGTGCGT-AAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCG 154394 | ||||||||| |||| | | | ||||| | | ||||| ||||||||| || Sbjct 75132 GCGACGCGTGCGTGAAACGGCGCTCCG-ACATCAGGTGATACGTCTCGATGGCGCTCTCC 75190 Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454 | || | |||| ||||| ||||||||||||||||||||||||||||| || || || Sbjct 75191 AGGTCGTGCGCGTGGATGCCCAGCGCGACGCGCATGAGCATGTGCTGCGGGCGCTCAACG 75250 Query 154455 A-CTCT 154459 | |||| Sbjct 75251 ATCTCT 75256 >seq3574 Length=6273 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 52393 CCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCG 52452 |||||||| | ||||||||||| || |||||| | ||||| |||||| ||| | Sbjct 5659 CCGAGCGCCTCGTGGCCTTCGCGGCCGTGGAGGGCATCTTTTTCTCCGGCTCCTTCTGCT 5718 Query 52453 CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGA 52512 ||||||| | | || | | ||| | ||||||||||| || ||| ||||||| | | Sbjct 5719 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCA 5778 Query 52513 TATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 | |||||||| || |||||| ||||| || ||||| Sbjct 5779 TCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCT 5818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 ||||| || | ||||| ||||| | || | |||||||||||| || || | ||| Sbjct 6017 GAGGCCGTCGACATCGAGTGCGAGTTCTGCACCGACGCGCTGCCGGTGGACCTCATCGGC 6076 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||||||| ||| || ||||||| | |||||||| || || ||| ||||| | Sbjct 6077 ATGAACGCGCGCCTGATGCGCCAGTACATTCACTTTGTGGCCGACCGCCTGCTGGTGGCG 6136 Query 52734 CTCGGGCAG-CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 || |||| | || ||| || ||||| ||| || ||||| || ||| | | ||| || Sbjct 6137 CT-GGGCTGCCCCAAGGCCTACAACGTGGCCAACCCCTTTGACTTCATGGAGACCATCTC 6195 Query 52793 GCT 52795 ||| Sbjct 6196 GCT 6198 >seq34 Length=156822 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 154239 AGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACAC 154298 ||||| |||||||||||| ||||| || ||| | | || |||| ||| || | | Sbjct 82099 AGCGTGTCGTAGATGCCGTCAATGCTGTCCTCGGGCATGCACAGCAGGAAGCAGCTGCTC 82158 Query 154299 ATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTT 154358 || ||||| |||| || || || || ||||| |||||||||||| Sbjct 82159 ATCTGCGGCCGCGGCGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTAAACCAGCGC 82218 Query 154359 TGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGC 154418 | |||||| | |||| || |||||||| | || | || | ||| ||||| ||| Sbjct 82219 TCGCTCATGGCGTGGTAGGTGCCGATGGCGCCCTCCAGGTCGCCCTTGTGGATGCCCAGC 82278 Query 154419 GCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || || ||||| |||||||||||||| || || |||| Sbjct 82279 GCCACTCGCATAAGCATGTGCTGCGGCCGCTCCACGAC 82316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496219659400800