Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq222 114 1e-20 seq34 86.0 6e-12 >seq222 Length=84561 Score = 114 bits (126), Expect = 1e-20 Identities = 611/956 (64%), Gaps = 44/956 (5%) Strand=Plus/Plus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCG 146694 || || || |||| ||| || || || |||||||| | | |||| | ||||| Sbjct 74381 GCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGGATCTCC 74440 Query 146695 GCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTG 146751 | |||||||||||||||||||||| |||||| || || ||||| || |||| ||| Sbjct 74441 GTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCT---CTTGCGGTTG 74497 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAAT 146811 |||| |||||||| ||||||||||| || || |||| | | || | |||| Sbjct 74498 CAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATGG-- 74555 Query 146812 CTAAACAAATCT-CTGGCCTTTACTTGTCTTTCGTACAGTTTATTCTTT-TCGTATTTCT 146869 | || || | || |||| | | ||||| || || || ||||| | Sbjct 74556 CAAACCACAGCTGCTGGGCGCGGATCGTCTTGCGCGCACGCCCCTCGCGCTCGTAGCGCG 74615 Query 146870 CGTACAATATTTCAAAACTAGAA-CCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGA 146928 ||| | ||||| || | || | ||| || || || || ||||| Sbjct 74616 TGTAGAGCCGCTCAAA-CTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGTTGGGG 74674 Query 146929 CAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAA 146988 || || |||||||| || || | ||| || || | ||| || | ||| | ||| Sbjct 74675 CAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCAC 74734 Query 146989 AGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGT-CTCAAGTT 147047 | | | || | |||||| || || | ||||| ||| || | | | | || | Sbjct 74735 ATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTT-CCCGTGGTTCTTGCGCAGCTC 74793 Query 147048 GAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCG 147107 || || || |||| || | ||||| ||||||| ||| ||| | || || || || Sbjct 74794 GATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTGCG 74853 Query 147108 CTTACCGCCC---TGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACAC 147164 ||| |||||| || || |||| ||| || ||| || ||||| || | ||||| || Sbjct 74854 CTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGTAC 74913 Query 147165 GAGGCCGCCGGATTTTG---TGGTGCCGTTG-TATTG-AGC-GCTG--ACGCTT----TG 147212 || |||| ||| | |||||||| | ||| | ||| | || ||| | || Sbjct 74914 GATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGTCGTG 74973 Query 147213 CACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTT 147272 | | ||| |||| || || | || ||||| | ||| |||| | | || | Sbjct 74974 AATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCGTGTC 75033 Query 147273 GTAGATGCCGTCGATGCTGTCTT---------CCTTGATGCATTGCAGGAAACACGAACA 147323 || ||||| ||||||||||| |||| ||| |||||| ||||| | Sbjct 75034 ATAAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGCACCAGGAAGCACGAGCT 75093 Query 147324 CATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAA--CGTG 147381 ||| || || || |||||| | || |||||||| ||||||||||| | | Sbjct 75094 CATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTGAAACGGCG 75153 Query 147382 CCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCC 147441 | | || ||||| |||||||| || ||||||||| | ||| | |||| ||| || Sbjct 75154 CTCCGA--CATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGGATGCCC 75211 Query 147442 AGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAAT 147501 || ||||||||||||||||||||||| || || || | ||| | | || | | Sbjct 75212 AGCGCGACGCGCATGAGCATGTGCTGCGGGCGCTCAACGATCTCTCCGTTTATCCGCAGC 75271 Query 147502 AGATATCCATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGT 147556 || || | | | | ||| || ||||| ||||| || | ||| |||||||| |||| Sbjct 75272 AGGTA-CGAGCGTTCCAGTGTCTTGAACCCAAAATAGTCGTACTCGTAGTCTCTGT 75326 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 146064 GTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGG 146123 |||||| || |||||||| | ||| ||||||| | || | |||||||||| | || Sbjct 73756 GTTGACAACGGTGAACTCGCCAGAGAGGACGCGCCGCGCGTAGATGTTGCTGGTGTAAGG 73815 Query 146124 CTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCAC 146183 |||||||||||| |||| || || ||||||| ||||| |||||| |||||| ||||| Sbjct 73816 CTCGAACGACTCCGTGTTGCCAAGGATCTGCGACGTCGAAGCGGTCGGCATGGGAGCCAC 73875 Query 146184 CAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| ||||| | || ||||| Sbjct 73876 CAGCAGCGAGTTGCGCAGCCCGTG 73899 >seq34 Length=156822 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 146061 CTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAA 146120 ||||||||| || |||||||| | || ||||| | || || | |||| |||| | Sbjct 79602 CTGGTTGACGACGGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTA 79661 Query 146121 CGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGC 146180 ||||| || |||||||||| || || ||||| || | || || |||||| ||| Sbjct 79662 GGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCCGTGGGCATGGGCGC 79721 Query 146181 CACCAGCAAAGAGTTTCTCACGCCGTG 146207 |||||||| ||||| | ||||||||| Sbjct 79722 CACCAGCAGCGAGTTGCGCACGCCGTG 79748 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGG 147332 |||||||||||| |||||||| || ||||| ||||||| || | ||| || || Sbjct 82107 GTAGATGCCGTCAATGCTGTCCTCGGGCATGCACAGCAGGAAGCAGCTGCTCATCTGCGG 82166 Query 147333 ACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCAT 147392 || |||||| || ||||||||||| ||||||||| ||| || | ||||| Sbjct 82167 CCGCGGCGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTAAACCAGCGCTCGCTCAT 82226 Query 147393 CAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCG 147452 || || || | ||||||| | | ||| | ||| ||| |||| || || || Sbjct 82227 GGCGTGGTAGGTGCCGATGGCGCCCTCCAGGTCGCCCTTGTGGATGCCCAGCGCCACTCG 82286 Query 147453 CATGAGCATGTGCTGGGGTCGTTCC 147477 ||| ||||||||||| || || ||| Sbjct 82287 CATAAGCATGTGCTGCGGCCGCTCC 82311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475459847493600