Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq222 93.3 4e-14 seq32 89.7 5e-13 >seq222 Length=84561 Score = 93.3 bits (102), Expect = 4e-14 Identities = 279/428 (65%), Gaps = 12/428 (3%) Strand=Plus/Minus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 || || ||||||||||||||||| | ||| | |||| | |||| | || | ||| | | Sbjct 75237 CAGCACATGCTCATGCGCGTCGCGCTGGGCATCCACGCGCACGACCTGGAGAGCGCCATC 75178 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || || || | ||||||| | ||||||||||||| ||||| | ||| | Sbjct 75177 GAGACGTATCACCTGATGTCGGAGCGCCGTTTCACGCACGCGTCGCCCACGCTCTTCAAC 75118 Query 123036 GCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT-CACCT--TGCGCGA---- 123088 | |||||| | |||||| || ||||| || || | ||| | | |||| Sbjct 75117 TCTGGCACGCCGCGCCCTCAGATGAGCTCGTGCTTCCTGGTGCACATGAAGGGCGATGGC 75058 Query 123089 --AGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTT 123146 ||||||||| || || ||||| || | || |||||| | |||||||| Sbjct 75057 TGCGACAGCATCGAGGGCATTTATGACACGCTCAAAGAGTGCGCGGTCATTTCCAAGAAC 74998 Query 123147 GGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGC 123206 | || ||||| ||| || | | |||||| | | | | ||| | ||| | || Sbjct 74997 GCGGGTGGCATCGGCCTGTCCATTCACGACATCCGTGCCACCGGCTCCTATATCCGCGGC 74938 Query 123207 ACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGG 123266 ||| |||| | || ||| ||| | |||||||||| || | || || | | ||| Sbjct 74937 ACCAACGGCACGTCCAACGGCATCGTACCCATGCTGCGCGTCTTTAACGACACGGCGCGT 74878 Query 123267 CACGTCGACCA---GGGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGG 123323 |||| ||||| |||||| || ||||| || ||| | || || || || || || ||| Sbjct 74877 TACGTGGACCAGGGGGGCGGAAAGCGCAAGGGGGCGTTTGCCATTTACCTGGAGCCCTGG 74818 Query 123324 CACGTTGA 123331 |||| ||| Sbjct 74817 CACGCTGA 74810 >seq32 Length=161680 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 138378 AAGCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTC 138437 ||||||||||||| | ||||| ||| ||||| |||||||| || || || ||| || Sbjct 59405 AAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTG 59464 Query 138438 AGCCCCGGCATGA---CGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaa 138494 ||||||||||||| ||| || | |||| | |||||||| ||| |||||| Sbjct 59465 AGCCCCGGCATGAGCCCGCGTT---TTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAG 59521 Query 138495 aaaaaaaCGCCTTCGACAATAGCGAAAGCCACCATGCGC 138533 ||||| | ||| ||||| || || ||||||| |||| Sbjct 59522 AAAAAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGC 59560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451964271224400