Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6015 773 0.0 seq3788 343 2e-89 >seq6015 Length=1491 Score = 773 bits (856), Expect = 0.0 Identities = 768/989 (78%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 || ||| | ||| ||||||||||||||||| |||||||||||||| |||||||| || | Sbjct 364 AGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 423 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 ||||||||||| | ||||||||| ||||| | ||||||||||| || | | Sbjct 424 GTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAAC 483 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||||||||||||||| |||||||| ||||| || || ||| | ||| || Sbjct 484 TGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGT 543 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||| || || | ||||||||| || || ||||||||||| | ||||| |||||||| Sbjct 544 GAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTT 603 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 ||| ||||||||||||||||| | |||||| ||||| |||||||| || ||||||||||| Sbjct 604 GAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTA 663 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 || |||||||||||||| || ||||| | ||| || || ||||| ||||| Sbjct 664 TGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTC 723 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 ||| | | || || || || | ||||| ||||| ||| ||| | ||||||||||| Sbjct 724 ACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAA 783 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| || || | ||||||||| |||||||| |||||||||||||| |||||||| Sbjct 784 TACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 843 Query 8014 GACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACC 8073 || | |||| ||||||| ||||| ||| || | ||||||| | || ||||| ||||| Sbjct 844 TACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACC 903 Query 8074 TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 ||| || | || || || | ||||||||| |||||||| |||||||| ||||| || Sbjct 904 TTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGC 963 Query 8134 TACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| |||||| ||||||||||||| |||| |||| | ||||||||||||||||||||| Sbjct 964 AACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTA 1023 Query 8194 TGCA-TAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGA 8252 ||| || | ||| | |||||||| | | | |||||| |||||||||||||||| | Sbjct 1024 -GCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATA 1082 Query 8253 GCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAG 8312 |||||| ||||||| ||| |||||||| || || |||||||| | |||||||||||||| Sbjct 1083 ACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAG 1142 Query 8313 AAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGG 8372 ||| || | |||||||| | |||||||||||| || || | || ||||||| || | Sbjct 1143 AAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTG 1202 Query 8373 GTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAA 8431 | |||||||| || || ||||| || || |||||||||| |||||||| |||||| || Sbjct 1203 GCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTG 1262 Query 8432 ATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGA 8491 || | |||| || || ||| ||||| | |||||||||||||||| || | ||| Sbjct 1263 AT-GTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGG 1321 Query 8492 TTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || | || || || | ||| | ||| || Sbjct 1322 TTTTCAGTTGAAGTGATCCACTCACAAAA 1350 >seq3788 Length=5474 Score = 343 bits (380), Expect = 2e-89 Identities = 376/500 (75%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || |||||||||||||| ||||| | ||| || ||||| || Sbjct 2241 AGAGCGTTACCACGCGGTAATACTTCTTCAGGGAATACTAGACGTTCGTGAGGTTGGTCT 2300 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || | |||||||| || |||||||| || Sbjct 2301 TGCGCAGCCATCCAAGCACGGATACCTTCGTTAAGAAGGATGTTTTTAGTATAGAAAGTT 2360 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 |||||||| || || || || || | ||| |||||||| || ||||||||||| | |||| Sbjct 2361 TCGAACTCAGGGTCTTCAGCAGCACGGATTTCTTGTGATACGAAGTCATAAGCACGAAGG 2420 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 ||||| || | ||||| || ||| | | ||||||| ||| | || ||||| || Sbjct 2421 TTAAGAGCTAAACCAACAACACCTAGAGCACTCATCCAAAGCCCCGTCACGGGAACTAAA 2480 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 ||||| ||||| |||| ||||||||| || ||| || | |||||| || || |||||| Sbjct 2481 AGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAAAGCTACACCAAAAATTTGTGACCAG 2540 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 ||||| || || || ||||| || || || || || | |||||||| | || || | Sbjct 2541 AAACGGTTTGCTGTTACCATTGAGTAAGTTTCTTCAGCCTGTGTAGGGTTGAAGGCACGG 2600 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || || || | ||||||||||| || || || || ||||||||||||||||||||| Sbjct 2601 AACGTGTTAGCACCGTCACCATCTTCGAATAATGTGTTTTCTACAGTAGCACCGTGAATA 2660 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| | || || |||||||| | ||| |||||||||||||| || || ||||| || Sbjct 2661 GCACATAATAAAGCACCACCTAAAACACCAGCTACACCCATCATGTGGAATGGGTTCAGT 2720 Query 6743 GTCCAGTTGTGGAAGCCCTG 6762 |||||||| ||||| || || Sbjct 2721 GTCCAGTTATGGAAACCTTG 2740 Score = 241 bits (266), Expect = 2e-58 Identities = 358/505 (71%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 6775 GAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAG 6834 ||| ||||| || || || |||||||| || ||||||||||||| || || || | Sbjct 3999 GAAACGGAAGATTGCAGCTACACCAAAGCTAGGAGCAAAGAACCAACCTGATTGACCTAA 4058 Query 6835 AGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATT 6894 || || || || || |||| ||||| |||| ||| || | || || || || || || Sbjct 4059 TGGGTAAATTAGGAAAACAGCAACAAATACAGAAATTGGCGCTGAGAAAGCAATAGCGTT 4118 Query 6895 GTAGGGACGAATACCGACTAGACGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAG 6954 || ||||| | ||| ||| || || |||||||| | | ||| || || || | Sbjct 4119 ATATGGACGTAAGTTTACTGAACGAGCAATTTCAAACTGTCTTAACATAAAGCCAATTAA 4178 Query 6955 GGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGAC 7014 | ||| || ||||| | || || || | ||||| || |||||||| ||| || Sbjct 4179 TGAAAAAGCACCGTGTAAAGCTACGAATGCCCATAAACCACCAAGTTGACACCAACGTGT 4238 Query 7015 GAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGC 7074 ||| || || ||||||||||||||||| | || || || || ||| | | | || || Sbjct 4239 GAAGTCACCTTGAGCTTCTGGACCCCAAACAAATAGAAGAGAGTGTGCCATACTGTTTGC 4298 Query 7075 AGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCC 7134 ||| ||||||||||| ||||| | ||| ||||| || || | || |||| ||| | || Sbjct 4299 AGGTGTTGATACAGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACC 4358 Query 7135 GTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTA 7194 || || ||||| || ||||||||||| || || | |||||| || ||||| | ||| Sbjct 4359 ATGTGTATACCATGATGTTACGAAAGTTGTACCAGTTAACCAACCACCTAGTGCAAAGTA 4418 Query 7195 AGCAGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAG 7254 |||| |||||| || | | |||||||||||| ||||| ||||| | || | || Sbjct 4419 AGCACAAGGGAAAAGTAATAAACCTGACCAACCTACAAATACGAAACGGTCTTGACGTAG 4478 Query 7255 CCAGTCATC-GAGTACATCAAACCA 7278 ||||||||| | || |||||||||| Sbjct 4479 CCAGTCATCAGCGT-CATCAAACCA 4502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622071219501600