Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq222 163 3e-35 seq32 100 3e-16 seq34 91.5 2e-13 >seq222 Length=84561 Score = 163 bits (180), Expect = 3e-35 Identities = 514/783 (66%), Gaps = 30/783 (4%) Strand=Plus/Plus Query 116424 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 116483 |||||| || || |||||||| || || || | ||||| || |||||||| | Sbjct 74374 AGGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAG 74433 Query 116484 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 116543 || ||||| || | || | ||| |||||||||| | | || || ||| Sbjct 74434 GATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCG 74493 Query 116544 GTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 116603 ||| || | ||||||||| ||||| || || || |||||||| | || | | || || Sbjct 74494 GTTGCAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGAT 74553 Query 116604 AGCCTTCCATACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGT 116659 || ||| || | || | ||| | | | | ||| || |||||||| ||||| Sbjct 74554 GGCAAACCA--CAGCTGCTG--GGCGCGGATCGTCTTGCGCGCACGCCCCTCGCGCTCGT 74609 Query 116660 ACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTA 116718 | |||||||| ||||||||| || ||| |||| || | || || || |||| Sbjct 74610 AGCGCGTGTAGAGCCGCTCAAACTCGTCGCCC-CAGCAGTCCGCTAGTCCAGGCGCCTCG 74668 Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 | || || ||||| ||||| | || || |||| ||||||| |||||||||||| | Sbjct 74669 TTGGGGCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTG 74728 Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 | ||| | || ||| | ||||| ||| | || || | ||| || || ||| Sbjct 74729 ACCCACATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGC 74788 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898 | ||| | ||||| | || || |||||||| || |||||||| | || | | |||| Sbjct 74789 AGCTCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCC 74848 Query 116899 TTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955 ||||| | || |||||| || || | |||||| ||||||| ||||| ||||| Sbjct 74849 TTGCGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATG 74908 Query 116956 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACA 117015 || | ||| || | || ||| || || || || ||| || | |||| | || Sbjct 74909 GGTACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATG 74968 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075 ||||| ||| || || || || || || ||| || || |||||||| |||| Sbjct 74969 TCGTGAATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGC 75028 Query 117076 CTGCCGTAGATCCCATCGA-----TCG-AG---TCACCCTT-ATTTGCGATGAGGAAGC- 117124 || | || || || |||| ||| || || ||||| || ||| | ||||||| Sbjct 75029 GTGTCATAAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGC-ACCAGGAAGCA 75087 Query 117125 --AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 |||| ||| || || | || || |||| ||||||||| || || | |||||| | Sbjct 75088 CGAGCT---CATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGT 75144 Query 117183 GAA 117185 ||| Sbjct 75145 GAA 75147 >seq32 Length=161680 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||||||||| || |||||||| ||||| || ||| || || Sbjct 59411 GCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTGAGCCCC 59470 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || || || || | |||||| || || || |||||||| ||||| ||||| Sbjct 59471 GGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAAAAGATG 59530 Query 127640 CCCTCCAC 127647 ||||| || Sbjct 59531 CCCTCGAC 59538 >seq34 Length=156822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 ||||||| ||||| || ||||| |||| || ||| | || |||||||||| Sbjct 79597 AGGTGCTGGTTGACGACGGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAG 79656 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| |||||||||||||| ||||| |||| ||| ||| ||| ||| ||||||||| Sbjct 79657 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCCGTGGGCATG 79716 Query 115975 GGTGCCATGAGAAGGCTGTTGCG 115997 || |||| || || |||||| Sbjct 79717 GGCGCCACCAGCAGCGAGTTGCG 79739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613454361692400