Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3574 138 2e-27 seq32 136 6e-27 seq34 114 2e-20 >seq3574 Length=6273 Score = 138 bits (152), Expect = 2e-27 Identities = 131/165 (79%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || ||||| || |||||||||||||| |||||||| || ||||| ||||||||| Sbjct 5824 AATAGCAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAG 5765 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CC 160032 | | ||||||| ||||||| |||||| |||||||| || |||| ||| ||| | || Sbjct 5764 AAGGTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGAGCC 5706 Query 160033 GCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 | |||||||| |||||||||||||| || |||||||| | ||| Sbjct 5705 GGAGAAAAAGATGCCCTCCACGGCCGCGAAGGCCACGAGGCGCTC 5661 >seq32 Length=161680 Score = 136 bits (150), Expect = 6e-27 Identities = 302/446 (68%), Gaps = 9/446 (2%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||| |||||||||||||||||| || ||||||||||||||||||| ||| || || | | Sbjct 59402 AGGAAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAG 59461 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 |||| |||||||||| ||| || ||||||||| || |||| |||| || | | | | Sbjct 59462 GTGAGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGG-CGCAGAATGAGCCCGA 59520 Query 160037 -AAAAAGATCCCCTCCACGGCCGCAAACGCCA-CGAGCCTCTCACCAAAAGAGGCGTTGG 160094 |||||||| ||||| || || ||||| |||| | ||| || | || | | || | Sbjct 59521 GAAAAAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGACG- 59579 Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGA 160154 | | | ||||| | |||||| ||||| | | | || ||||| ||| | Sbjct 59580 ---CCTCGATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAA 59636 Query 160155 CGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAG-CAATCAGCTTC 160213 |||| ||| | | ||| | ||| | ||||||||||| ||| | | | |||| Sbjct 59637 TGGCGCGAAAGAGACGGTCTTTCTCGTGGACATCCTTGAT-GTAGTGGTCCAACAGCAGG 59695 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 |||||| | || |||| || || || || || ||||| || ||| ||| | |||| Sbjct 59696 GAGTACGTCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCC 59755 Query 160274 TCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCG 160333 || | |||||||| | |||| | |||| || | || || | || || Sbjct 59756 TCTGGGAGTTGCACCTCGCGCATGAAGCGCGATGCCAGGTTCTCGTTGACGATGCCATCA 59815 Query 160334 GCGGCCGCAAAGAAAGCCAACACGTG 160359 | | ||||||||||| | |||||| Sbjct 59816 GACGTAGCAAAGAAAGCGAGCACGTG 59841 >seq34 Length=156822 Score = 114 bits (126), Expect = 2e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 || ||||||||||||||||| |||||||| |||| |||| | ||||| || | || Sbjct 79122 AGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAGGTGAGC 79181 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 |||| | ||||||||||| |||| | ||| | |||||| ||||||||| |||| Sbjct 79182 TTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAAGCTCTGGCTCTGGTCGATG-TAGGC 79240 Query 204005 GCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 ||| || || |||||||| | | || || |||| |||||||||||||||||| | Sbjct 79241 GCCGCGGTCGGCGGCCATGTCCACAAGCGTGCGCTGCTTGATCTCCCACACCGTCTTGTA 79300 Query 204064 CA 204065 || Sbjct 79301 CA 79302 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 204148 CCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCC 204207 ||| | ||||| | | |||| || ||| |||||| |||||| || || || || Sbjct 79566 CCAGACGCCCATGCGGTTCAGGTCGTGCAGCAGGTGCTGGTTGACGACGGTGAACTCGCC 79625 Query 204208 GGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCC 204267 |||||||| | || | | | |||| |||| | || || || |||||||||||| Sbjct 79626 CGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCC 79685 Query 204268 GAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACC 204327 | ||||| ||||||||||||||||||||| |||| ||||| ||||||||||| || Sbjct 79686 CAGGATCTGGCTGGTGCTGGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCACGCC 79745 Query 204328 GT 204329 || Sbjct 79746 GT 79747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795086717258400