Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq367 100 7e-16 seq4034 86.0 1e-11 >seq367 Length=69066 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| || | |||||||||||||| ||| Sbjct 68812 CGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCCAGAGTG 68871 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 68872 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 68921 >seq4034 Length=4767 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| |||| ||||||||| || | || Sbjct 2003 CGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTG 1944 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| ||||| ||||| || |||||||||||||| Sbjct 1943 CGCCCATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGTCCGG 1894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178817527011630