Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq367 105 8e-18 seq4034 96.9 4e-15 seq589 93.3 5e-14 >seq367 Length=69066 Score = 105 bits (116), Expect = 8e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||||| || || |||||||| | |||||||| || Sbjct 68818 CGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGGCCG 68877 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| |||| |||||||||||| Sbjct 68878 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 68918 >seq4034 Length=4767 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||||| ||||| |||||||| | ||| |||||| | Sbjct 1997 CGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGCCCA 1938 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||||||||| ||||| || || | ||||||||||| Sbjct 1937 TCCTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGTC 1897 >seq589 Length=52745 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||||| ||||| |||||||||| || |||||| || Sbjct 25592 CGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCG 25533 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||| |||||||| || || || | ||||||||||| Sbjct 25532 TCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTC 25492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565189718842800