Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq32 206 3e-48 seq3574 140 3e-28 seq263 109 5e-19 seq589 95.1 1e-14 seq367 89.7 5e-13 seq1357 87.8 2e-12 seq678 87.8 2e-12 seq148 87.8 2e-12 seq4034 86.0 6e-12 >seq32 Length=161680 Score = 206 bits (228), Expect = 3e-48 Identities = 380/551 (69%), Gaps = 21/551 (4%) Strand=Plus/Plus Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA--G 132949 ||||| ||||||||||| || | |||||||||| || ||||| || || ||||| | Sbjct 59405 AAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATT--TGAAAAGG 59462 Query 132950 TCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAA 133009 | | || |||||||| ||||||||||||||||| || |||||| ||| |||||| | Sbjct 59463 TGAGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGA 59522 Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGC 133069 | |||| ||||||||| || || || ||||||| |||| | ||||| | || Sbjct 59523 AAAAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAAC---ACATCCGACG 59579 Query 133070 TGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGG 133129 ||||||| || ||||||| |||||||| | || || ||||| || || |||| Sbjct 59580 CCTCGATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAATGG 59639 Query 133130 CGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC----ACGTAGGTGTCGATGAGGGTC 133185 || || | |||| ||||| || ||| | | |||| ||| | || Sbjct 59640 CGCGAAAGAGACGGTCTTTCT----CGTGGACATCCTTGATGTAGTGGTCCAACAGCAGG 59695 Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || ||| | || ||| |||||||| || ||||| || || |||||||| || |||||| Sbjct 59696 GAGTACGTCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCC 59755 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || | ||||| || | ||| ||| |||| || |||||||||||||| || Sbjct 59756 TCTGGGAGTTGCACCTCGCGCATGAAGCGCGATGCCAGGTTCTCGTTGACGATGCCATCA 59815 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 | || || || || ||||||||||||| |||| | ||| | |||| | |||| Sbjct 59816 GACGTAGCAAAGAAAGCGAGCACGTGCTTGA-GAAA--GTGCTGCTCGTCGCT---GCGC 59869 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 | ||| | | |||||| ||||| || | ||||||| | ||||| || || | | Sbjct 59870 AGCTCGTCCCACTTGTCCTGTGACAGATCAATCTCCTCGGCAGTCCAGAAGCTGGCTTGG 59929 Query 133426 GCTTTTTTGTA 133436 || |||||||| Sbjct 59930 GCCTTTTTGTA 59940 >seq3574 Length=6273 Score = 140 bits (154), Expect = 3e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||| | || ||| || |||||||| |||| ||||||||| | | ||||| |||||| Sbjct 5826 TGAATAGCAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGG 5767 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | ||||||||||||||| || || |||||||| || |||| | ||| || Sbjct 5766 AGAAGGTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGC 5707 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | || || |||| |||||| ||||||||||| ||||| ||||||||| Sbjct 5706 CGGAGAAAAAGATGCCCTCCACGGCCGCGAAGGCCACGAGGCGCTCG 5660 >seq263 Length=80451 Score = 109 bits (120), Expect = 5e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 132850 ACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAA 132909 |||||| || ||||| | || ||| | |||||| ||| |||| ||||||||||| Sbjct 27986 ACGCGCTCCTCGCTCAGGCGGTGCTTGAGGTGCTTGTACAGGCAGCAGGCAAAGTCGCAG 27927 Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 |||| ||||||||| | | |||||| ||||| || | || |||||||||||||||| Sbjct 27926 TGCAGGCCCTCGTCGCGGCTGATGAGTACGTTGGAAAACGACAGGCCGGGCATGAGGCCG 27867 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 || || |||||||| || |||| | ||| ||| Sbjct 27866 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTG 27834 >seq589 Length=52745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||||||||| | || ||||| || || || |||| |||| Sbjct 25480 GGCATCCCCCCGGACCAGCAGCGGCTCATCTTTGCTGGCAAGCAACTCGAGGACGGGCGC 25539 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 || ||| ||||||||||||||| ||||| ||| ||||| || |||||||||| Sbjct 25540 ACGCTCGCCGACTACAACATCCAGAAGGAGAGC-ACGCTACACCTGGTGCTGCG 25592 >seq367 Length=69066 Score = 89.7 bits (98), Expect = 5e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 68930 GGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 68871 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || || ||||||||||| || ||||| ||| || ||||| |||||||||| || | Sbjct 68870 ACTCTGGCTGACTACAACATTCAGAAGGAGAGC-ACCCTGCACCTGGTGCTGCGCCTGCG 68812 Query 38465 AGGCGGCC 38472 || |||| Sbjct 68811 CGGTGGCC 68804 >seq1357 Length=27981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| ||||| | ||||||||| |||||||| |||| |||| Sbjct 4255 GGAATCCCCCCGGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 4196 Query 38406 ACCCTCAACGACTACAACATCCAAAAGG 38433 ||||| ||||||||||| || |||| Sbjct 4195 ACCCTTGCTGACTACAACATTCAGAAGG 4168 >seq678 Length=48865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 |||| ||||| ||||| |||||||| |||||||| || | || ||||| ||||| || Sbjct 42644 GACAGAGAGGCCATTCCGGCCGACCAGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAG 42585 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCA-AAAGGAAGCGACGCTGCATTTG 38450 |||| ||||||| ||||||||||||||| | || ||| |||||||| ||| Sbjct 42584 GACGGCTGCACCCTGGCCGACTACAACATCCAGAGCGGGAGC-ACGCTGCACTTG 42531 >seq148 Length=98734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||||||||| | || | ||||||| ||||||||||| | ||| ||||| ||| Sbjct 10300 ATCCAAGACAAAGAGGGCACTCACCCCGACCAGCAGCGGCTCATCTTCGCCGGCAAGCAG 10241 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 || || || | ||||| || |||||||| || ||| || ||| | || || Sbjct 10240 CTCGAGGATTATCGCACGCTGGCTGACTACAATATTGGTCCGGACGCCACGATCCACTTT 10181 Query 38451 GTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || | |||||| Sbjct 10180 GTGCTGCGTCTGTGCGGCGGC 10160 >seq4034 Length=4767 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| |||||||| || | || || || ||||| || || | |||| Sbjct 1885 GGCATTCCCCCGGACCAGCAGCGGCTAATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGC 1944 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||||||||||| ||||| ||| |||||||| |||||||||| Sbjct 1945 ACGCTAGCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCG 1997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129722617600