Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2872 120 4e-22 seq222 89.7 7e-13 seq537 86.0 8e-12 seq59 86.0 8e-12 >seq2872 Length=9955 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 7175 TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAG 7234 || || ||||| | ||| || || || || || || ||||| || || ||||||||| Sbjct 3462 TTGTCCATCTTGGCGTCGCGCAGGCACTTCTCCACTGGGTCCATGCACTTGCGGAACAAG 3521 Query 7235 TCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCG 7294 ||||| ||||| |||||||| || |||||||||||||| || ||||||| ||| || Sbjct 3522 TCCATGCACAGCTCCTCAAAGCGCGCACGGGTAATGGACGTGGCAAAATCAATGCCCTCA 3581 Query 7295 TATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGC 7354 | | || || | |||||||| || || || | ||| || | ||| ||||| |||||| Sbjct 3582 AACAGAGAGTCCAGCTCAATGGTGGTCTGAGCAGCCGAGGACAGCGTGCGCTTGGCGCGC 3641 Query 7355 TCACACGCCGTTCG 7368 || || || || || Sbjct 3642 TCGCAGGCGGTGCG 3655 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTTA 6583 |||||||| |||| ||||| ||||| ||||| ||| | || ||||| || | || Sbjct 2455 TAGTTTTCCAGACTGTTCTTGGCCTCCACCTTCTTCTTGAGCTGCTCATCATCCGCCTTG 2514 Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643 ||||| || || || || ||||| ||||| || || || || || | ||||| ||| Sbjct 2515 TACTTCTCAGCTTCCTGCACCATACGCTCAATCTCCTCCTTGGACAACCGGCCCTTGTCA 2574 Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 ||||||||||| ||||| | ||||||| | ||| || || || ||||| | Sbjct 2575 TTCGTAATCGTGATCTTGTTCTTGTTACCCGTCGTCTTGTCCTCCGCGGACACATTGAGG 2634 Query 6704 ATACCATTTGCATCAACATCGAA 6726 ||||| || ||||| | |||||| Sbjct 2635 ATACCGTTGGCATCGATATCGAA 2657 >seq222 Length=84561 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126707 AATATGGCCGGTGGTCTCATGCAACTCGTCGCCTACGGCGCCCAAGATGTCTACTTGACT 126766 || |||| || ||||| |||||||||||||| ||||| || || || ||||| ||||| Sbjct 63489 AAAATGGGTGGCGGTCTAATGCAACTCGTCGCTTACGGTGCTCAGGACATCTACCTGACT 63430 Query 126767 GGTAACCCAAAAGTCACTTTCTTCCAGGCGGTCTACAAACGCCACACTAACTTTGCGATG 126826 || ||||| | |||| || ||| ||| || || || ||||| |||||||| ||| Sbjct 63429 GGCAACCCCCAGATCACGTTTTTCAAGGTCGTGTATCGCCGTCACACCAACTTTGCCATG 63370 Query 126827 GAAAACATCGAACA 126840 || |||||| || Sbjct 63369 GAGTCCATCGAGCA 63356 >seq537 Length=56109 Score = 86.0 bits (94), Expect = 8e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 |||||||||||||||||||||| ||||||||||| || || ||| ||||||||||||| Sbjct 20825 GTGGCCGAGTGGTCTAAGGCGCAGGATTAAGGCTCCTGTCCGCAAGGGCGCAGGTTCAAA 20766 Query 131849 TCCTG 131853 ||||| Sbjct 20765 TCCTG 20761 >seq59 Length=133869 Score = 86.0 bits (94), Expect = 8e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 |||||||||||||||||||||| ||||||||||| || || ||| ||||||||||||| Sbjct 46093 GTGGCCGAGTGGTCTAAGGCGCAGGATTAAGGCTCCTGTCCGCAAGGGCGCAGGTTCAAA 46152 Query 131849 TCCTG 131853 ||||| Sbjct 46153 TCCTG 46157 Score = 86.0 bits (94), Expect = 8e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 |||||||||||||||||||||| ||||||||||| || || ||| ||||||||||||| Sbjct 133684 GTGGCCGAGTGGTCTAAGGCGCAGGATTAAGGCTCCTGTCCGCAAGGGCGCAGGTTCAAA 133625 Query 131849 TCCTG 131853 ||||| Sbjct 133624 TCCTG 133620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635078099187600