Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3574 114 2e-20 seq222 89.7 6e-13 seq1562 84.2 3e-11 >seq3574 Length=6273 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| ||| | || || ||| || ||||| ||||| ||||| || ||||||||| | Sbjct 5661 GAGCGCCTCGTGGCCTTCGCGGCCGTGGAGGGCATCTTTTTCTCCGGCTCCTTCTGCTCC 5720 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| || |||||||| || ||| ||||||||||||||| ||| Sbjct 5721 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATC 5780 Query 102300 TCTCGTGACGAGGGACTCCAC 102320 || |||||||| || ||| Sbjct 5781 AGCCGCGACGAGGGCCTGCAC 5801 >seq222 Length=84561 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 137399 AATGGCCGGTGGTCTCATGCAACTTGTCGCTTACGGCGCCCAAGACGTCTACTTGACTGG 137458 ||||| || ||||| |||||||| ||||||||||| || || ||| ||||| ||||||| Sbjct 63487 AATGGGTGGCGGTCTAATGCAACTCGTCGCTTACGGTGCTCAGGACATCTACCTGACTGG 63428 Query 137459 TAACCCAAAGGTTACCTTCTTCCAAGCTGTCTACAAGCGTCACACTAACTTCGCGATGGA 137518 ||||| || | || || ||| | | || || |||||||| ||||| || ||||| Sbjct 63427 CAACCCCCAGATCACGTTTTTCAAGGTCGTGTATCGCCGTCACACCAACTTTGCCATGGA 63368 Query 137519 AAACATCGAACA 137530 |||||| || Sbjct 63367 GTCCATCGAGCA 63356 >seq1562 Length=23877 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || ||||| || ||||| || ||||| | || || | ||| ||| || || ||| Sbjct 5813 CGGTCGAAGCGGCCAGGGCGCAGCAGCGCCTGGTCCAGCACATCGGGGCGGTTGGTGGCG 5872 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||| || | | ||| || | | || || || |||||||| |||| |||||||| Sbjct 5873 GCGAGCACGATGACACCCGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 5932 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 || || || || || || || || | || ||| || || | || || |||| Sbjct 5933 ATCGTCTGCTCGCGCTCGTCGTTGCC--GCCGCCCATGCCGGCGCCACGCTGGCGGCCCA 5990 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 |||| || |||||||||||||||| |||||| || Sbjct 5991 CGGCGTCGATCTCATCAATGAAGATGATGCAGGG 6024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620688938560800