Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq222 102 1e-16 seq288 82.4 9e-11 >seq222 Length=84561 Score = 102 bits (112), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 131662 ACTACGTCTACCTCGACACCGAGGAGCGCCGCCGCTTCGCCCAGAAGGGTCACGAGTACC 131721 ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 62786 ACTACATCTACCTCGACACCGACGAGCGCCGCCGCTTCGCCCAGGTCTCCCACGAGTACC 62727 Query 131722 TCATCGAGCAGGTCCAGCACACTGGTGTTGA 131752 ||||||||||| | ||| ||| |||| ||| Sbjct 62726 TCATCGAGCAGCTGCAGTTCACCGGTGATGA 62696 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131073 AAAATGGCCGGTGGTCTCATGCAACTCGTAGCGTACGGCGCCCAGGACGTTTACCTTACT 131132 ||||||| || ||||| ||||||||||| || ||||| || |||||| | ||||| ||| Sbjct 63489 AAAATGGGTGGCGGTCTAATGCAACTCGTCGCTTACGGTGCTCAGGACATCTACCTGACT 63430 Query 131133 GGTAACCCTGAGGTGACCTTCTTCCAGGCGAAATACAAGCGCCACACCAACTTCGCGATG 131192 || ||||| || | || || ||| ||| || || ||||||||||| || ||| Sbjct 63429 GGCAACCCCCAGATCACGTTTTTCAAGGTCGTGTATCGCCGTCACACCAACTTTGCCATG 63370 Query 131193 GAGAACATCGAGCAGACCGTCAACGG 131218 ||| |||||||||| ||||||| Sbjct 63369 GAGTCCATCGAGCAGGTGTTCAACGG 63344 >seq288 Length=77340 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 |||||||| |||||||||||||||||| |||||||||||||||| ||||||||| || Sbjct 77188 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACCAGTTCGAGCCTGGTA 77129 Query 136777 GGG 136779 ||| Sbjct 77128 GGG 77126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588925274442000