Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq34 102 1e-16 seq32 91.5 2e-13 seq222 89.7 6e-13 >seq34 Length=156822 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | || || || |||| |||||| | ||| || || |||| |||| ||| Sbjct 80890 GTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 80949 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| |||||| || |||||||| ||||||||||| | ||||||||| ||| Sbjct 80950 TTGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTGG 81009 Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 106683 | || || || || ||||| | | || || | || | | |||||| ||||| Sbjct 81010 GCCTCCAGGATGGCGAACCACAGCTGCTGC-GCGCGCACCACGCGCTTGGCCTTGCCCTC 81068 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 106723 | ||||||||| |||| || | || |||| ||| ||| Sbjct 81069 GGACTCGTACTTGTTGTACAGCTCCTCGAACTTCTCGCCC 81108 >seq32 Length=161680 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || || || || |||||||| ||| || || Sbjct 59411 GCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTGAGCCCC 59470 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || || || || | ||| | || ||||||||||| || ||||| ||||| Sbjct 59471 GGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAAAAGATG 59530 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| || ||||| || | | |||| |||||| Sbjct 59531 CCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAA 59568 >seq222 Length=84561 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 128483 AATGGCCGGTGGTCTCATGCAACTTGTCGCTTACGGCGCCCAAGACGTCTACTTGACTGG 128542 ||||| || ||||| |||||||| ||||||||||| || || ||| ||||| ||||||| Sbjct 63487 AATGGGTGGCGGTCTAATGCAACTCGTCGCTTACGGTGCTCAGGACATCTACCTGACTGG 63428 Query 128543 TAACCCAAAGGTTACCTTCTTCCAAGCTGTCTACAAGCGTCACACTAACTTCGCGATGGA 128602 ||||| || | || || ||| | | || || |||||||| ||||| || ||||| Sbjct 63427 CAACCCCCAGATCACGTTTTTCAAGGTCGTGTATCGCCGTCACACCAACTTTGCCATGGA 63368 Query 128603 AAACATCGAACA 128614 |||||| || Sbjct 63367 GTCCATCGAGCA 63356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589929987903600