Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq6015 726 0.0 seq3788 302 5e-77 seq4831 82.4 9e-11 >seq6015 Length=1491 Score = 726 bits (804), Expect = 0.0 Identities = 750/979 (77%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || |||||| | || || || | ||||| | || ||||||||||||| || | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || ||| | | ||||| ||| | |||||| |||| |||||||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || ||||||||||| |||||||| || || ||||||| || | || |||||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||| | ||||| || | || |||| ||||| |||||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| || | |||||||||||| | || ||||||||||||| |||||| |||| Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | |||||||| | || | || |||||||||||||||||||||| | |||| || Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 180107 CTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166 || |||||||| || |||||| || || || || |||||||| |||||||| || Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 ||||||| | || || || | || |||||||||||||| || | ||||| | || || Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286 || || ||||||| |||| | || |||||||| |||||||||||||| |||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346 ||||||||| | || || || ||||| || || |||||| | ||||| ||||||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 180347 TTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGG 180406 |||| | ||||| || || | | |||||||| ||||||| || || ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 180407 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGG 180466 |||| ||||||||||||||||| || ||||||||||| || || || || |||||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 180467 TCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526 |||| | |||||||| || || || ||||||||||| |||||| | ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 180527 AGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 180586 || ||||| || | || || |||||||| || | || | || ||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 180587 CCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACAC 180646 ||| |||||||||||||||||||| || | | || ||||||||||| | ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 180647 TTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 180706 |||||||||| | ||||||| ||| | ||||||||||| |||||||||||||| || Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 180707 TCACAACTTCCCACTTGAC 180725 |||||||||||| || ||| Sbjct 391 TCACAACTTCCCTCTAGAC 373 >seq3788 Length=5474 Score = 302 bits (334), Expect = 5e-77 Identities = 373/510 (73%), Gaps = 0/510 (0%) Strand=Plus/Minus Query 181927 TCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGC 181986 ||| || |||| || || ||||| ||||| || || || ||||| ||||||||||| || Sbjct 2750 TCTATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGC 2691 Query 181987 TGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCT 182046 |||| | | ||||| || ||| | | ||| |||||||||| || || || || || | Sbjct 2690 TGGTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATT 2631 Query 182047 GTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGA 182106 | |||| |||||| || || || ||| || ||| | | || || | ||||| Sbjct 2630 ATTCGAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGA 2571 Query 182107 AACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAG 182166 ||| || |||||||| ||||| ||||| |||||||| || || || ||| | || || Sbjct 2570 AACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTC 2511 Query 182167 CAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAG 182226 || ||| | ||||| || ||||| ||||| || ||||| || | ||| ||||||| || Sbjct 2510 TAACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAG 2451 Query 182227 TTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGA 182286 | | | ||| || ||||| | ||||| |||||||||||||||||||| ||||| ||||| Sbjct 2450 TGCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGA 2391 Query 182287 AATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAA 182346 |||| | || | |||||||| |||||||| || ||||| || || ||||| || | || Sbjct 2390 AATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAA 2331 Query 182347 TGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCC 182406 |||||| | ||||| ||| | || | || ||||| || || | || ||||| Sbjct 2330 CGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCC 2271 Query 182407 TGAGGAAGTATTACCCAGAGGTAACGCACT 182436 ||| ||||||||||| | |||||||| || Sbjct 2270 TGAAGAAGTATTACCGCGTGGTAACGCTCT 2241 Score = 246 bits (272), Expect = 4e-60 Identities = 360/509 (71%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 181420 ATGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 181479 ||||||||| | |||||||||||| | ||||| || || ||||| || ||||| Sbjct 4503 ATGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 181480 TGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTAC 181539 || || | ||||| || |||||| ||||| | || || ||| | ||||| || || Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 181540 TTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTT 181599 ||| || || || ||||| || || || || || |||| ||| | || ||| ||| || Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 181600 CCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 181659 | | || || ||||| ||||| ||||| || ||||| || |||||||| | |||| Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 181660 GGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTT 181719 |||||| |||||||| || || ||| || ||| |||||||| || | ||||| || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 181720 TGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGC 181779 || || | ||||| || || | | || || |||||| | || || |||||| |||| Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 181780 TCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATT 181839 |||| | | | || || || || || |||||||| || | || ||| ||||||| Sbjct 4143 TCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 181840 CGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTT 181899 || |||| || || || || || | || ||||| ||||||||||||| || || || Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 181900 CGGTGTCGCGGCGATTTTCCGCTTCCTTC 181928 ||||| || || || ||||| ||| ||| Sbjct 4023 TGGTGTAGCTGCAATCTTCCGTTTCATTC 3995 >seq4831 Length=2924 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 || |||||||||||| || ||||| || ||||||| || ||||||||||||||| || Sbjct 1641 TCTTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 1700 Query 141315 CTACCTGGGGAGT 141327 ||||||||||||| Sbjct 1701 CTACCTGGGGAGT 1713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610344229575600