Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq6015 682 0.0 seq3788 302 5e-77 >seq6015 Length=1491 Score = 682 bits (756), Expect = 0.0 Identities = 753/994 (76%), Gaps = 14/994 (1%) Strand=Plus/Minus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| |||||| | || ||||| | ||| | | || | |||||||| ||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCT 169521 ||||| || || | || || ||| || || |||||| | || ||||| || || || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 1231 Query 169522 CCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT-TTCTTGTATGGTAACAA 169580 || || || ||||| || ||| | || |||||| | |||||| ||||| || |||||||| Sbjct 1230 CCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTT-TACGGTAACAA 1172 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 ||||||| | ||||| || | ||| | || |||||||| || |||||||||||||||| Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 |||||||| || ||| |||| || ||||| || || ||||||||||| || | | | Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 169701 CTTCCACTTCCTTATTGGTATCT-CAGCATACATGGGAAGACAGTGGGAACTATCATACA 169759 | ||||||||| | ||| | | | || |||||||| | |||||||| |||| | | Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 169760 GATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCG 169819 | ||||| |||||||| |||||| |||||| ||||| || |||||| |||| || || Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 169820 CTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 169879 ||||||||||||| |||||| |||| || ||||||||||| ||||||||||| |||||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 169880 TCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATC 169939 || |||||||||||||| ||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 169940 CTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATG 169999 | ||||||||| ||| || || || | || || || || |||||||| |||||||| | Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 170000 GTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATG 170059 ||||| | ||||||||||| ||||| | |||||||| || | || ||| ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 170060 GTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 170119 |||| || || ||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 170120 GTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAG 170179 ||||| | |||||||| || ||||||||||||||||| | ||||||||||||||| Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 170180 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 170239 | | || || ||| | || | ||||| || || | ||| | | || ||||| |||| Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 170240 ACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGT---CC 170296 || | || ||||||||||| |||||||||||||| || || || || |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGA--CTCAC---AAGGTCGTGTATT 458 Query 170297 CAACA--TGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAG 170354 |||| |||| || | | ||| | || ||||| ||||||||||| ||||| || | Sbjct 457 AAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCG 398 Query 170355 AAATGCACACAACTTCCCACTAGACCTAGCATCT 170388 || || ||||||||||| |||||| |||| ||| Sbjct 397 TAACGCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 302 bits (334), Expect = 5e-77 Identities = 387/535 (72%), Gaps = 25/535 (5%) Strand=Plus/Minus Query 171034 TATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAG 171093 |||| | ||||||||||| ||| ||| |||| ||||| |||||||||||||| || | Sbjct 2748 TATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTG 2689 Query 171094 GAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGT 171153 | | ||||||| || ||||||||||| ||||| ||||| || || | |||||||| | Sbjct 2688 GTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2629 Query 171154 ATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTTG 171213 ||||| | | | || ||| | | ||||||||||| Sbjct 2628 TCGAAGAT------GGTGACGGTGCTAACA---------------CGTTCCGTGCCTTCA 2590 Query 171214 ATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGA 171273 | |||||||||| |||||||||||| ||| | ||||||||| | ||||||||||| | Sbjct 2589 ACCCTACACAGGCTGAAGAAACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAA 2530 Query 171274 TATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTG 171333 | |||||| | |||||||||||||| | | ||||||||| | ||| | || ||||| | Sbjct 2529 TTTTTGGTGTAGCTTTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCG 2470 Query 171334 TCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCAT 171393 | | ||| | |||| || ||||| | || ||| |||| |||||||| | || | Sbjct 2469 TGACGGGGCTTTGGATGAGTGCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTT 2410 Query 171394 ACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACA 171453 | || || ||||| ||||| || | || || |||||||| |||||||| |||||||| | Sbjct 2409 ATGACTTCGTATCACAAGAAATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATA 2350 Query 171454 CTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAACCAC 171513 |||| || || |||||||| |||||||| | || |||||| | | |||||||| | Sbjct 2349 CTAAAAACATCCTTCTTAACGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTC 2290 Query 171514 ATGAGAACTTC--GTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 | |||| || |||||||| |||||||| ||||| | |||||||| || ||| Sbjct 2289 A--CGAACGTCTAGTATTCCCTGAAGAAGTATTACCGCGTGGTAACGCTCTATAA 2237 Score = 206 bits (228), Expect = 3e-48 Identities = 347/502 (69%), Gaps = 0/502 (0%) Strand=Plus/Minus Query 170526 TGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCT 170585 |||||||||| ||| |||||| || ||| ||||| ||||| |||| ||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 170586 GGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACC 170645 ||| | |||||| | |||||||| ||| | || | ||||||||||| || || || Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 170646 TTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTC 170705 ||||| ||||||||||||||||||||| | ||| | || || | || || ||||||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 170706 CTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGG 170765 |||| ||||| || || ||||||| || |||| || |||||| || ||||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 170766 GGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTT 170825 || || ||||| |||||| || ||||||| ||||| || ||||||||| || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 170826 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCA 170885 ||||| ||||| || | ||| | | || || || ||| | ||||| ||||| || || Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 170886 GGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTC 170945 | ||| | | | || || ||||| | || ||||| || || | || || Sbjct 4142 CGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTT 4083 Query 170946 ACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTC 171005 | | || || || || ||| ||||||| |||||||||| || || || Sbjct 4082 GTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTT 4023 Query 171006 GGTGTCGCAGCAATTTTTCGTT 171027 ||||| || ||||| || |||| Sbjct 4022 GGTGTAGCTGCAATCTTCCGTT 4001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579162915297600