Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq6015 762 0.0 seq3788 282 5e-71 >seq6015 Length=1491 Score = 762 bits (844), Expect = 0.0 Identities = 760/980 (78%), Gaps = 4/980 (0%) Strand=Plus/Minus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||| | || |||||| | ||||| | || ||||||||||||| ||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| || ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || |||||||| || |||||||| || || ||||||| || | || ||||||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||||||| | ||||| || |||| ||||||| |||||||| | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| || | || || |||||||| || ||||||||||||| ||||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 168161 TCTTTCACTTCCTCATCGGTATCTA-TGCATACATGGGACGTGAATGGGAACTTTCATAT 168219 | | ||||||||| | ||| | || ||| |||||||| ||||| |||||| | || | Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTC 994 Query 168220 CGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGT 168279 |||||||||||||||||||||||| |||||| ||||| || ||||| |||||||| || Sbjct 993 CGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGC 934 Query 168280 GCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 168339 || |||||| |||| || || | || |||||| ||||| |||| ||||| | || Sbjct 933 GCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGT 874 Query 168340 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 168399 ||| || || ||||||| |||| | || ||||||||||||||||| || || ||||| Sbjct 873 ATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCAC 814 Query 168400 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 168459 || ||||| ||| | || |||||||| ||||||||||| || || ||| |||||| Sbjct 813 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCAC 754 Query 168460 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 168519 || || |||||||| || | | | || || ||||||| |||||| ||| | Sbjct 753 GGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 694 Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 |||||| || || ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 693 GGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTC 634 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 |||||||| ||||||||||||||||||||||||||||| || || || ||||||||||| Sbjct 633 GGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTA 574 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 ||||| ||||| ||| |||| || |||||||| || | || | || || ||||| ||| Sbjct 573 GCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTC 514 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| |||||||||||||||||||| || | | || || |||||||| || ||| Sbjct 513 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAAC 454 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 168819 || |||||||| | | ||||| ||| | ||||||||||| ||||| ||||||||| Sbjct 453 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 394 Query 168820 GCACACAACTTCCCACTCGA 168839 || ||||||||||| || || Sbjct 393 GCTCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 282 bits (312), Expect = 5e-71 Identities = 365/502 (73%), Gaps = 4/502 (1%) Strand=Plus/Minus Query 169820 CAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTG 169879 ||||| ||||| |||||||| |||| ||||||||||||||||||||||| || | || Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 169880 GGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGAC 169939 || || || || | | |||||| || |||| ||| ||||| |||||||| | ||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 169940 GGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 169999 ||||| || || || ||| || || | | ||||||| ||||| ||||| || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 170000 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGT 170059 ||||| || |||||||| |||||||| || || || ||| | || || |||||||||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 170060 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACA--TCCTCTATTG 170117 ||| | || || |||||| | || || || || | ||| ||||||| | ||||| | Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTA--G 2443 Query 170118 GCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAG 170177 | || |||| | ||||| || ||||||||||| || ||||| || || ||| | | Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 170178 CAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGAC 170237 | || ||||| || || || || || ||||| || ||||||||||| | || ||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 170238 TTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAG 170297 | ||||| ||| |||| | || ||||| || ||| | | ||||| ||||||| Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAG 2263 Query 170298 TTCTTCCGAGAGGTAACGCACT 170319 | | ||| | |||||||| || Sbjct 2262 TATTACCGCGTGGTAACGCTCT 2241 Score = 264 bits (292), Expect = 1e-65 Identities = 352/489 (72%), Gaps = 0/489 (0%) Strand=Plus/Minus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||||| | ||||| || ||||| | |||||||| ||| || | ||| | Sbjct 4487 GATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCAGGTTTATTACTTTTC 4428 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || ||| || |||| | || || ||| | ||||||||| | || || || || ||| Sbjct 4427 CCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACTTTCGTAACATCATGG 4368 Query 169439 TACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTC 169498 || || || || | ||| | |||||||||||| ||||||| | ||||| ||||| Sbjct 4367 TATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCTGTA 4308 Query 169499 AGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAA 169558 |||||||| || ||||| |||||| || || || | |||||||||||||| ||| Sbjct 4307 TCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAA 4248 Query 169559 GGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGT 169618 || || ||| || ||||||||| | |||||| | ||| || ||||| | || ||| Sbjct 4247 GGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTAGCTTTACACGGT 4188 Query 169619 GCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATC 169678 || ||| |||| ||||| || ||| | || ||||||||| | || ||| | | | Sbjct 4187 GCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCTCGTTCAGTAAACTTA 4128 Query 169679 CGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTT 169738 ||||| ||||| |||||||| ||||| | || ||| |||||||||| ||| || || Sbjct 4127 CGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTTGTTGCTGTTTTCCTA 4068 Query 169739 ATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATC 169798 || |||||| | || || || |||||||||||||| |||||| ||| | |||||| Sbjct 4067 ATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTTGGTGTAGCTGCAATC 4008 Query 169799 TTCAGGTTC 169807 ||| | ||| Sbjct 4007 TTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574424123461200