Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq6015 645 4e-180 >seq6015 Length=1491 Score = 645 bits (714), Expect = 4e-180 Identities = 712/946 (75%), Gaps = 2/946 (0%) Strand=Plus/Minus Query 168533 GGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTT 168592 |||||||||||||| | |||||||| ||| | | || ||| || || ||||| | Sbjct 1308 GGTTGGTTCGGTGTAATCATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATC 1249 Query 168593 GCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCT 168652 || || || ||||| || || || || ||||| || ||| | || || ||| | ||| || Sbjct 1248 GCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCT 1189 Query 168653 CTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 168712 || | || || |||||||||||| ||||||| || | ||| |||| ||||| || ||| Sbjct 1188 CTTCTTTACGGTAACAACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGT 1129 Query 168713 CTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGT 168772 ||||||||||||||||||||||||| ||||| | || ||||||||||| || |||||| Sbjct 1128 TTACACTTCTACCCAATTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGT 1069 Query 168773 CCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCT-CTGCCTACATGGGTAGACA 168831 |||||||| | | | | |||||||| | || | | |||| ||||||||| | | Sbjct 1068 CCTTACCAACTAATCGTTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGA 1010 Query 168832 GTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACC 168891 |||||||||||| | | | |||||||| | || |||||| ||||||||| ||||| || Sbjct 1009 GTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCC 950 Query 168892 AGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGA 168951 |||| ||||||| || |||||| | || |||||| |||| || ||||| ||||| || Sbjct 949 AGTAGCTGCAGCTAGCGCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGA 890 Query 168952 TGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCA 169011 |||||||||| |||| || || || |||||||||||| ||||||||||||| ||||| Sbjct 889 TGGTATGCCTTTAGGTATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCA 830 Query 169012 CAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCT 169071 |||||| |||||||| || ||||| ||| ||| || || ||| | || ||||| || | Sbjct 829 CAACATCCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATT 770 Query 169072 ATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGA 169131 |||||| |||||||| |||||| | || || || || ||||| | || || ||||| | Sbjct 769 ATTCTCTGCAATGCACGGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAA 710 Query 169132 AGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGC 169191 ||||| ||| | |||||| || ||||||||||||||||| || || || || || Sbjct 709 CGAATCAGCTAACGAAGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGC 650 Query 169192 AGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAG 169251 ||| || || ||||||||| | ||||||||||| || || ||||||||||| | Sbjct 649 AGCTCACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTC 590 Query 169252 TCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTAT 169311 | |||||||||||||| | | |||||| | || | ||||| || || | ||| | Sbjct 589 ATTACACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCT 530 Query 169312 CTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAA 169371 | || ||||| |||||| | ||||| || ||||| ||||||||||||||||| | Sbjct 529 TTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACA 470 Query 169372 CGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGT 169431 ||| | | || |||| ||| | | ||| | || ||| | ||||||||||| Sbjct 469 AGGTCGTGTATTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 410 Query 169432 AATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCT 169477 |||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 409 AATGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564392987467200