Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq6015 663 0.0 seq3788 257 2e-63 >seq6015 Length=1491 Score = 663 bits (734), Expect = 0.0 Identities = 750/1000 (75%), Gaps = 4/1000 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || ||| | || |||||| | ||| | | || | ||||||||||||||| || Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| ||| | || || ||| || || |||||| | || ||||| || || || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 1231 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998 || || || ||||| || ||| | || ||||| | |||||| ||||| || |||||||| Sbjct 1230 CCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTT-TACGGTAACAA 1172 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 ||||||| | ||||| || | ||| | || ||||| || ||| | ||||||||||| || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 |||||||| || || | || || ||||| ||||| ||||||||||| || | | | Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 172119 CTTCCACTTCCTTATCGGTATCT-CAGCATACATGGGAAGACAGTGGGAACTATCATACA 172177 | ||||||||| | ||| | | | || |||||||| | |||||||| |||| | | Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 172178 GATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTG 172237 | ||||||||| | |||||||| ||| || || ||||| || ||| | ||||| | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 172238 CTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 172297 |||| ||| | || || ||| | || || ||||||||||| ||||||||||| |||||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 172298 TCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATC 172357 || ||||| |||||||| ||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 172358 CTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACG 172417 | ||||||||| ||| || || || | ||||| || || |||||||| |||||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 172418 GTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACG 172477 |||| |||||||| || || ||||| | || ||||||||| |||||| ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 172478 GATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 172537 | ||| || || ||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 172538 GTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAG 172597 ||||| | |||||||| || ||||| ||||||||||| | | ||||||||||||| Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 172598 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 172657 | | || || ||| | || | ||||| || || | ||| | | || ||||| |||| Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 172658 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTA 172717 ||||||||||||||||||||||||||||||||||||| | | ||| | | | Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 172718 CATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATG 172777 | |||| ||| | | ||| | || ||| ||||||||||||| ||||| || | || | Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 172778 CACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTC 172817 | ||||||||||| ||||| | |||||| || | |||| Sbjct 392 CTCACAACTTCCCTCTAGACTTAGCTTCTTCAAACGCTTC 353 >seq3788 Length=5474 Score = 257 bits (284), Expect = 2e-63 Identities = 378/535 (71%), Gaps = 25/535 (5%) Strand=Plus/Minus Query 173456 TATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAG 173515 |||| | ||||||||||| ||| ||| |||| ||||| |||||||||||||| || | Sbjct 2748 TATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTG 2689 Query 173516 GAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGT 173575 | | ||||||| || ||| ||||||| ||||| ||||| || || | |||||||| | Sbjct 2688 GTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2629 Query 173576 ATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTG 173635 ||||| | ||| ||| | ||| | ||| | || || Sbjct 2628 TCGAAGA------------TGGTGACGGTGCTA--------ACA-CGTTCCGTGCCTTCA 2590 Query 173636 ATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGA 173695 | |||||||||| ||||||||||| ||| | ||||| ||| | ||||||||||| | Sbjct 2589 ACCCTACACAGGCTGAAGAAACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAA 2530 Query 173696 TATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTG 173755 | |||||| | || || || ||||| | | ||||||||| ||||| | || || || | Sbjct 2529 TTTTTGGTGTAGCTTTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCG 2470 Query 173756 TCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCAT 173815 | | ||| | |||| | ||||| | || ||| | || ||||||||| | || | Sbjct 2469 TGACGGGGCTTTGGATGAGTGCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTT 2410 Query 173816 ACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACA 173875 | ||||| ||||| ||||| || | || || ||||| || |||||||| |||||||| | Sbjct 2409 ATGACTTCGTATCACAAGAAATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATA 2350 Query 173876 CTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCAC 173935 |||| || || |||||||| |||||||| | || |||||| | | ||| ||||| | Sbjct 2349 CTAAAAACATCCTTCTTAACGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTC 2290 Query 173936 ATGAGAACTTC--GTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 | |||| || ||||| || |||||||| ||||| | |||||||| || ||| Sbjct 2289 A--CGAACGTCTAGTATTCCCTGAAGAAGTATTACCGCGTGGTAACGCTCTATAA 2237 Score = 210 bits (232), Expect = 3e-49 Identities = 351/504 (70%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 172948 TGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 173007 |||||||||| ||| |||||| || ||| ||||||||||| | || ||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 173008 GGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACC 173067 ||| | |||||| | |||||||||||| || | | ||||||||||| || || || Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 173068 TTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTT 173127 ||||| ||||||||||||||||||||| | || |||| || | ||||| ||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 173128 TTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGG 173187 ||||| ||||| || || ||||||| || |||| || |||||| || ||||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 173188 GGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTT 173247 || || ||||| |||||| ||| |||||||| ||||| || || ||||| || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 173248 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCA 173307 ||||| ||||| || | ||| | | || || || ||| | | |||||||| || || Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 173308 GGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTC 173367 | ||| | | | || || ||||| | || ||||| || || | || || Sbjct 4142 CGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT- 4084 Query 173368 ACTAGCATCTTTT--TAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | || | |||| |||| |||||| |||| || |||||||||| || ||| | Sbjct 4083 TGTTGC-TGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCT 4025 Query 173426 TCGGTGTCGCAGCAATCTTTCGTT 173449 | ||||| || |||||||| |||| Sbjct 4024 TTGGTGTAGCTGCAATCTTCCGTT 4001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588000554090400