Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq6015 782 0.0 seq3788 302 5e-77 >seq6015 Length=1491 Score = 782 bits (866), Expect = 0.0 Identities = 763/980 (78%), Gaps = 2/980 (0%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 ||||| || ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || |||||||| || |||||||| || || ||||||| || | || ||||||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 |||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 | | |||||||| | || | || ||||||||| ||||| |||||| | |||| || Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 162743 GTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 || | |||||||||||||||||| || || ||||| || || || || ||||| | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| | || || || | || |||||||| ||||| || | ||||| || |||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 |||| ||||| ||||||| |||| | || |||||||| ||||||||||| || ||||| | Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | ||||||||||| ||||| || ||||| || ||||||||| | ||| ||||||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| || ||||| || || | ||||||| || ||||||| || ||| ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 ||||| || |||||||||||||| |||||||||||||| ||||| || |||||||||| Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 ||||||| ||||||||||| || |||||||||||||| ||||| || ||||||||||| | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 |||| ||||| ||| |||| || |||||||| || | || | ||||| ||||| |||| Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 |||| |||||||||||||||||||| || | | || || |||||||| || |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 | ||||||||| | | |||||||| || ||||||||||| ||||||||||| || | Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 163343 CTCACAACTTCCCACTTGAC 163362 ||||||||||||| || ||| Sbjct 392 CTCACAACTTCCCTCTAGAC 373 >seq3788 Length=5474 Score = 302 bits (334), Expect = 5e-77 Identities = 377/515 (73%), Gaps = 4/515 (1%) Strand=Plus/Minus Query 164126 TATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTG 164185 |||| | ||||| || ||||||||||| ||||||| ||||| |||||||| || |||| Sbjct 2748 TATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTG 2689 Query 164186 GTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGT 164245 || | |||| || || || ||| |||||||||||| | || || ||||| ||||| | Sbjct 2688 GTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2629 Query 164246 ATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGA 164305 |||||||| || || ||||| || || || | | ||||||| ||||| | Sbjct 2628 TCGAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAA 2569 Query 164306 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTA 164365 |||| || ||||| || |||||||| |||||||| || || || ||||| || || |||| Sbjct 2568 CTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTA 2509 Query 164366 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA--TC 164423 ||||||| ||| | || || |||||| | || || || || | ||| || |||| | Sbjct 2508 ACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTG 2449 Query 164424 CTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGA 164483 ||||| || || |||| | ||||| || ||||||||||| || || ||| ||||| Sbjct 2448 CTCTA--GGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGA 2391 Query 164484 GATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAA 164543 || | || || ||||| ||||||||||| ||||||||||| || |||||| | | || Sbjct 2390 AATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAA 2331 Query 164544 CGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAACGGTTTGTCTTCCC 164603 |||||| ||||||| ||| | || | ||||| || ||||| | || ||||| Sbjct 2330 CGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCC 2271 Query 164604 AGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 ||||||||| | ||| | ||||| || || |||| Sbjct 2270 TGAAGAAGTATTACCGCGTGGTAACGCTCTATAAT 2236 Score = 259 bits (286), Expect = 5e-64 Identities = 362/505 (72%), Gaps = 2/505 (0%) Strand=Plus/Minus Query 163618 TGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCT 163677 |||||||||| | ||||||||||| | || |||||||||||| | |||||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 163678 GGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACT 163737 || ||| ||||| | || |||||| | ||| | ||||| ||| | |||||||||||| Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 163738 TTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTT 163797 ||||| || || ||||| || ||||| | || ||||| || | || ||| ||| || Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 163798 CTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGG 163857 | || || ||||| ||||| ||||| || ||||| || |||||||| || | ||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 163858 GGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTT 163917 ||||| || ||||| || || ||| || ||| |||||||| || | ||| || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 163918 GTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCT 163977 || || | ||||| || ||| | | ||||| || ||| | | || |||||| ||||| Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 163978 CGCCTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTT 164036 || | | | | | | | || || || || ||||||||||| | || ||| |||| || Sbjct 4142 CG-TTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 164037 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTT 164096 ||| ||| || || || ||||| | ||||||||| |||||||||| ||||| || Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 164097 TGGAGTGGCAGCAATCTTCAGATTC 164121 ||| || || ||||||||| | ||| Sbjct 4023 TGGTGTAGCTGCAATCTTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557535978078000