Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq6015 691 0.0 seq3788 325 4e-84 >seq6015 Length=1491 Score = 691 bits (766), Expect = 0.0 Identities = 746/993 (75%), Gaps = 12/993 (1%) Strand=Plus/Minus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 ||||| || ||| | || ||| | |||||| | || ||||||||||||| || | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||||||| | ||| | ||||| ||| || ||||||||||| ||| ||| |||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 || || ||||||||||||||||| || ||||| ||||||| || | || |||||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 ||||||| | ||||| || | || ||||||| ||||||||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 |||||||| || || || ||||||||||| ||||| |||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 167387 TTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 167446 || |||||||| | || | || ||| |||||||||||||||||| | |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 167447 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 167506 | | ||||||||||| |||||| |||||| ||||| |||||||| |||||||| || Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 167507 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTAT 167566 ||||||| | || || || | || |||||||| ||||| || | |||||| | ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 167567 CTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 167626 | ||||| ||||||| |||| | || |||||||| |||||||||||||| |||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 167627 CTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGG 167686 ||||| ||| | || |||||||| ||||| || ||||| | ||| |||||||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 167687 TTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 167746 ||| | ||||| || ||| | | |||||||| || |||| || || ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 167747 TTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGG 167806 |||| || ||||| |||||||| || || |||||||| || ||||| ||||||||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 167807 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGC 167866 ||| | |||||||||||||| || ||||||||||| || || | ||||||||| | || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 167867 AGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAA 167926 || ||||| ||| | ||||| |||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 167927 CCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCT-- 167984 ||| |||||||||||||||||||| ||| | ||| || ||||| || | Sbjct 511 CCTTAACGGTTTCAACTTCAACCA----ATCAGTTGTAG-ACTCACAAGGTCGTGTATTA 457 Query 167985 ---ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 |||||||||||| | ||||||||||| | ||||||||||| |||||||||||| Sbjct 456 AACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGT 397 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 || ||||||||||||||||| ||| | ||| || Sbjct 396 AACGCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 325 bits (360), Expect = 4e-84 Identities = 372/500 (74%), Gaps = 0/500 (0%) Strand=Plus/Minus Query 168996 CAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTG 169055 ||||| |||||||||||||||||||| ||||| || |||||||||||||| ||| |||| Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 169056 GGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGAT 169115 || || || || | | ||| ||||| |||| ||| ||||| || || | | ||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 169116 GGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCA 169175 ||||| || || || ||| || || || || |||| || || || || ||| Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 169176 ATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGG 169235 ||||| || ||||||||||||||||| || || |||||| | || ||| ||| ||| | Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 169236 TGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGT 169295 ||||| || ||||| ||||| || ||||| || | ||| ||||||| ||| | | ||| Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 169296 ATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCA 169355 || ||||| | ||||| |||||||||||||||||||| || || ||||| ||| | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 169356 GCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTT 169415 || ||||| || ||||| || || ||||| || || |||||||| | ||||||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 169416 CGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTA 169475 ||||| ||| | || | || |||||||| || | || |||||||| |||||| Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAGTA 2261 Query 169476 CTTCCCCGAGGTAATGCCCT 169495 | || || ||||| || || Sbjct 2260 TTACCGCGTGGTAACGCTCT 2241 Score = 214 bits (236), Expect = 2e-50 Identities = 357/513 (70%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 168480 TGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCT 168539 ||||| |||| | ||||||||||| | || |||||||| ||||| |||||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 168540 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCT 168599 || | | ||||| || |||||| |||| | || |||||| | ||||| || || Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 168600 TTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 168659 ||||| || |||||||| || || || || | ||| || | || || ||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 168660 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGG 168719 | ||||| || || || || ||| | ||||| || |||||||| || | ||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 168720 GGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTT 168779 ||||| || || ||||| || ||| | |||||||||||||| || | ||||| || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 168780 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCA 168839 || || | ||||| ||||| | |||| || || ||| | | ||||||||| | || Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 168840 CGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 168895 ||| || ||| | ||||| || || |||||||| ||||| | || || |||| Sbjct 4142 CGT----TCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGT 4087 Query 168896 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-AT 168954 |||||| || || || || ||||| | |||||||| ||||||| || ||||| | Sbjct 4086 ATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 4027 Query 168955 CTTTCGGGGTCTCAGCAATCTTCCGATTCCTTC 168987 |||| || || | ||||||||||| ||| ||| Sbjct 4026 CTTT-GGTGTAGCTGCAATCTTCCGTTTCATTC 3995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560559717636000