Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq6015 737 0.0 >seq6015 Length=1491 Score = 737 bits (816), Expect = 0.0 Identities = 760/989 (77%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||||||||| | ||||| ||||| || ||| | ||| | |||||||| ||||| || Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||||| || || | || || | |||||| | || ||||||||||| || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 1231 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || || ||||| || ||| | |||||||| |||||||| | | || ||||||||| Sbjct 1230 CCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAAC 1171 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 |||||| | |||||||| | || | ||| ||||| || || |||||||||||||| || Sbjct 1170 ATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAATT 1111 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || || ||||||| ||| | ||||| ||||| |||| |||||| | | Sbjct 1110 TGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGTT 1051 Query 215594 TTCCACTTCCTCATTGGTATTT-CTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652 | |||||||| | ||| | | |||| ||| || | |||||||| | |||| | | Sbjct 1050 TGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 215653 ATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGC 215712 ||||||||| | || |||||| |||||||||||| || || ||| |||| || || Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 215713 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAAT 215772 |||||| | || || ||| | || || ||||| ||||| |||| |||||| | || || Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 215773 CTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCC 215832 | || || ||||||| |||| | || ||||| |||||||||||||| || |||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 215833 ATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGG 215892 |||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 215893 TTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGG 215952 |||| | ||||| || || ||||| | || |||||||| | ||||| ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 215953 TTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGG 216012 |||| || || ||||| || |||||||||||||||||||| || ||||||||||| || Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 216013 TCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGC 216072 ||| | |||||||||||||| || ||||||||||| | | ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 216073 AGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAA 216132 || | || ||||| |||| ||| || || | ||| | ||||||||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 216133 CCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTAC 216192 |||||||||||||||||||||||| || || |||||| || ||| || | || Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 216193 TTGGGCAGACGTTCTTAACAGAGCAGGACTT-GGTATGGAAGTAATGCACGAGCGTAACG 216251 |||||||||| | | ||| | || |||| |||||||||||||||||||||||||||| Sbjct 451 TTGGGCAGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 216252 CTCACAACTTCCCATTAGACTTGGCTGCT 216280 ||||||||||||| ||||||| ||| || Sbjct 392 CTCACAACTTCCCTCTAGACTTAGCTTCT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745017429847200