Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq6015 684 0.0 seq3788 345 5e-90 >seq6015 Length=1491 Score = 684 bits (758), Expect = 0.0 Identities = 753/996 (76%), Gaps = 16/996 (2%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||| | ||||| || | |||||| | || |||||||||||||||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTC 164881 |||||||| ||| | || | || ||| | || || || | || ||||||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAACA-TCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | || || ||||| |||||||| ||||| || || | |||||||| | |||||||||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001 |||||||| | |||||||| | || |||||||||| || || | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061 ||||||||||||| || | || || ||||| |||||||||||||||||||| | | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121 | | |||||||| | |||||| |||||||||||||||||||||||| | |||| || Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181 | | ||||||||||| ||||| || || || || || || ||||| ||| || Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241 | || ||| | || || || | || ||||| ||||| |||||||||||| | |||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATC 165301 || |||||||| |||| ||| |||| |||||||| || || ||||| |||||||| | Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 165302 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 165361 | ||||||||| | || |||||||| ||||| ||||| || | |||||||| ||||| | Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 165362 GAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AACTA 165419 | | |||||||| || | |||| || ||||||||| | || |||| ||| | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAA--AACGAATCAGCTAACGA 695 Query 165420 CGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTT 165479 ||||| ||||| ||||||||||| || || |||||||| || || ||||| ||||| Sbjct 694 AGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTT 635 Query 165480 CGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 165539 ||||||| | || ||||||||||| || |||||||| || ||||| | ||||||||||| Sbjct 634 CGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCT 575 Query 165540 CGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATT 165599 || || ||||| || | ||||| |||||||| ||| | ||| || || ||||| || Sbjct 574 AGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTT 515 Query 165600 CAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCC 165659 |||||| |||||||||||||||||||| || |||| | | || |||| || | Sbjct 514 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGT--AGACTC---ACAAGGTCGTGTA 460 Query 165660 T-----ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAG 165714 | |||||||| ||| | | ||||||||| | ||||||||||| ||||| ||| Sbjct 459 TTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAG 400 Query 165715 CGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||||||||||||| || ||| | ||| || Sbjct 399 CGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 345 bits (382), Expect = 5e-90 Identities = 379/504 (75%), Gaps = 0/504 (0%) Strand=Plus/Minus Query 166674 CAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTC 166733 ||||| ||||| |||||||||||||||||||| || |||||||||||||| ||| || | Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 166734 GGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGAT 166793 |||||||| || | | ||| || || |||| ||| ||||| ||||| | | ||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 166794 GGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCA 166853 ||||| || || || ||| || ||| || |||| || | |||||||| || ||| Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 166854 ATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGG 166913 ||||| ||||||||||| | ||||| || || || ||| | || || ||| ||| | Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 166914 TGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGT 166973 ||||| || ||||| ||||| || ||||| || | ||| || |||| ||| | | ||| Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 166974 ATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCA 167033 || ||||| | ||||| |||||||||||||||||||| || || |||||| | | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 167034 GCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATG 167093 || || || |||||||| ||||| |||||||| || ||||| || | || || ||||| Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 167094 CGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTT 167153 ||| |||||||||| | || |||||||| || || | |||||||||||||| || Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAGTA 2261 Query 167154 CTTCCTAGAGGTAACGCTCTCTAA 167177 | || | ||||||||||| ||| Sbjct 2260 TTACCGCGTGGTAACGCTCTATAA 2237 Score = 246 bits (272), Expect = 3e-60 Identities = 359/505 (71%), Gaps = 2/505 (0%) Strand=Plus/Minus Query 166158 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 166217 ||||| |||| | ||| |||||||| | ||| |||||||| ||||| |||||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 166218 GGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACT 166277 || | | ||| | || |||||| |||| | || |||||| | ||||| || ||| Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 166278 TTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTT 166337 ||||| || |||||||| ||||| | || | ||| | || ||| ||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 166338 CTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGG 166397 | ||||| || || || || || ||| | ||||| || ||||| || || | ||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 166398 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTT 166457 ||||| || |||||||| || ||| | ||||| |||||||| || | ||||| || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 166458 GTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCT 166517 || ||| | |||||||||||| | ||||||| || ||| | | ||||||||||| ||| Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 166518 CGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTC 166577 ||| |||| | ||||| || || || || ||||| || | || ||| |||| || Sbjct 4142 CGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTT 4083 Query 166578 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-ATCTTT 166636 ||| ||| || || || ||||| | |||||||| ||||||| || ||||| | |||| Sbjct 4082 GTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTT 4023 Query 166637 CGGGGTCTCAGCAATCTTCCGATTC 166661 || || | ||||||||||| ||| Sbjct 4022 -GGTGTAGCTGCAATCTTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563612254713600