Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq6015 664 0.0 >seq6015 Length=1491 Score = 664 bits (736), Expect = 0.0 Identities = 714/942 (76%), Gaps = 2/942 (0%) Strand=Plus/Minus Query 169732 GGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTT 169791 |||||||||||||| | |||||||| ||||| | | ||| || | || ||| | Sbjct 1308 GGTTGGTTCGGTGTAATCATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATC 1249 Query 169792 GCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCA 169851 ||||||||||| ||||| || || ||||||||||| ||| | || || ||| | ||||| Sbjct 1248 GCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCT 1189 Query 169852 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 169911 | | || ||||||||||||||| | ||||| || | ||| |||| ||||| || ||| Sbjct 1188 CTTCTTTACGGTAACAACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGT 1129 Query 169912 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGT 169971 | |||||||| || ||||||||||| || ||||| || |||||||| || ||||||||| Sbjct 1128 TTACACTTCTACCCAATTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGT 1069 Query 169972 CCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACA 170030 ||||| ||| || | | | ||||||||| | || | | |||| ||||||||| | | Sbjct 1068 CCTTACCAACTAATCGTTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGA 1010 Query 170031 GTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090 ||||||| |||| | |||||||||||||||||| |||||| ||| || || || ||||| Sbjct 1009 GTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCC 950 Query 170091 AGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGA 170150 ||| | ||||| ||||||||||||||| || || | || || || || |||||||| Sbjct 949 AGTAGCTGCAGCTAGCGCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGA 890 Query 170151 CGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCA 170210 || |||||| |||||||| ||||| || ||||||||| ||||||||||||| ||||| Sbjct 889 TGGTATGCCTTTAGGTATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCA 830 Query 170211 CAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACT 170270 |||||| ||||||||||||||||| ||| ||| ||||||||| | || || || || | Sbjct 829 CAACATCCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATT 770 Query 170271 CTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAA 170330 ||||| ||||||||||||||| | || || || || ||||| | || ||||| || || Sbjct 769 ATTCTCTGCAATGCACGGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAA 710 Query 170331 CGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGC 170390 ||| ||| ||| | || ||| || || ||||||||||||||||||||||| || || Sbjct 709 CGAATCAGCTAACGAAGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGC 650 Query 170391 AGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAG 170450 ||| || || ||||| ||| | | ||||||||||| ||| || ||||| |||| Sbjct 649 AGCTCACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTC 590 Query 170451 TCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTAT 170510 | ||||||||||| ||| | | || || | | || ||||| || | | ||| | Sbjct 589 ATTACACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCT 530 Query 170511 TTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATC 170570 || || ||||| || |||||||| || || ||||||||||| ||| | ||||| | Sbjct 529 TTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACA 470 Query 170571 TGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGT 170630 ||| ||| | || ||||||||| | | ||| | || ||| ||||||||||||| Sbjct 469 AGGTCGTGTATTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 410 Query 170631 AATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 |||||| |||||||| || ||||||||||| || ||||| || Sbjct 409 AATGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGC 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582797802216000