Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4034 93.3 9e-14 seq589 84.2 5e-11 >seq4034 Length=4767 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||||||||| |||||||||||| || ||||| || |||||||||| Sbjct 1752 CCTTCTTTGTCTTGAATTTTCGCCTTGACGTTCTCTATTGTGTCTGACGATTCCACTTCA 1693 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | || || ||||| | |||||| Sbjct 1692 AGAGTGATCGTCTTCCCGGTAAGGGTCTTAACGAATATTTGCAT 1649 >seq589 Length=52745 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||||||||| || ||||| |||||| || || || |||||||| ||||||||| Sbjct 25356 CCTTCTTTGTCCTGGATTTTCGCCTTGACATTTTCTATCGTGTCCGACGACTCCACTTCA 25297 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||||||| |||| || || ||||| | ||||| Sbjct 25296 AGAGTAATCGTCTTTCCCGTCAGCGTCTTCACGAATATCTGCAT 25253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109383657044630