Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq6015 663 0.0 >seq6015 Length=1491 Score = 663 bits (734), Expect = 0.0 Identities = 734/973 (75%), Gaps = 4/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || |||||||| |||||||| ||||||||||| | ||||| || | Sbjct 380 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 439 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || || | ||||| ||| || |||| || |||||||| Sbjct 440 ATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAACTGATTGGTTGAAGTTG 499 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || || || || || || ||||| || || ||| | ||| | |||||||| || | Sbjct 500 AAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGTGAACCAAATACCGATA 559 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 |||||||||||||| | ||| ||||| | |||||| |||||||| ||||| || ||| Sbjct 560 ACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTGG 619 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | |||||||||||| |||||||| || || || || || ||||| ||||||||| Sbjct 620 AAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTATGTTTCTTCTTCTTGA 679 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || |||||| | ||| ||| | ||||| || ||||| ||||||| || ||| Sbjct 680 CCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTCACGGATTAACGATGAA 739 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | |||||| |||||||||||||||| | ||||| |||||||||||||| || Sbjct 740 GTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 799 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 |||||||| || || |||||||||||||| || || || ||||| || | |||| ||||| Sbjct 800 AACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTG 859 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || |||||| | ||||| ||||| ||||| |||||||| || | || || Sbjct 860 AAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACCTTGGCCAATTGGGTAA 919 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 || | ||||||||| || || || |||||||| |||||||||||| |||||||||| Sbjct 920 ACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGA 979 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA-AATGCACCAAT 84643 |||||||| | ||| | || | |||||| ||||||||||||| |||| || |||| | Sbjct 980 CGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT-AGCAGTATACACCTAA 1038 Query 84644 CAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACT 84703 ||||||||| | || | ||||| ||||| ||||| || |||| ||| ||||| | | | Sbjct 1039 AAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGT 1098 Query 84704 TGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGC 84763 || ||||||||||| || ||||| |||| ||||||||| ||||| | ||| | ||| || Sbjct 1099 AGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGATTACAGC 1158 Query 84764 ACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTC 84823 ||| | ||||||||||| ||||| | |||||||||| ||||||||||||||||| || Sbjct 1159 ACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTGGCTCACGGATACCATC 1218 Query 84824 AATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTA 84882 || || ||||| || ||| | | ||| || |||||||| || || || |||| ||| | Sbjct 1219 GATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTGA-TGTTGCAGTAAGAA 1277 Query 84883 GAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGA 84942 || || ||||| | || |||||||| | || | |||||| | ||| || |||| Sbjct 1278 GACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGTTTTCAGTTGAAGTGA 1337 Query 84943 CCCAATCACAGAA 84955 ||| ||||| || Sbjct 1338 TCCACTCACAAAA 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571224399061200