Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq6015 470 4e-128 >seq6015 Length=1491 Score = 470 bits (520), Expect = 4e-128 Identities = 701/991 (71%), Gaps = 4/991 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||||||||| | || ||||| |||||| | || | || |||||||| || | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || || | || | || || || || || | || |||||||| || ||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 1231 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || ||||| || ||||| || ||||||||||| || || || | | ||||| ||||| Sbjct 1230 CCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAAC 1171 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || |||| || || |||| | |||||||| || || |||| || ||||| || Sbjct 1170 ATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAATT 1111 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| || || ||||||||| ||||||| || || || || ||||| || | Sbjct 1110 TGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGTT 1051 Query 26102 TTCCACTTCTTAATAGGAGTAG-CAGC-ATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | |||||| | |||| ||| | || | ||| || | |||||||| |||||| | Sbjct 1050 TGTCACTTCCTTTTAGGTGTATACTGCTACATG--GGTCGTGAGTGGGAATTATCTTTCC 993 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | |||| ||| | |||||||| |||||| || |||| ||| || | |||||| || Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||||||||| || | || ||||| || ||||| |||||| | |||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 || |||||||| ||||| ||| ||||||||||||| || || || || || ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 ||||||| ||| ||||||||||| || || ||||| | | ||| |||| ||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | || |||||||| || | || ||||| || || | | ||| || | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || ||||| ||||| ||||| ||||| || || || || || ||||| ||||| | Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 | | ||||| || || || || || || ||| ||||| | || ||||| || | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 || ||||||| ||| | || || ||| | ||| || | ||| | | || ||||| || | Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 |||| || ||||| ||||| ||||| ||||| ||||| | || || || | Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||| || | | ||||| |||||| | || | ||||| |||||||||||||| | Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 26760 CTCATAACTTTCCACTTGACTTAGCATCATC 26790 |||| ||||| || || |||||||| || || Sbjct 392 CTCACAACTTCCCTCTAGACTTAGCTTCTTC 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146714395029360