Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq6015 527 2e-145 >seq6015 Length=1491 Score = 527 bits (584), Expect = 2e-145 Identities = 710/986 (72%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 368 GCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 427 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||| |||||||| | || | || | || || || ||||| Sbjct 428 GCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAACTGAT 487 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| || || ||||||||||| || | || | ||| || | | Sbjct 488 TGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGTGAAC 547 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | | || ||||||||||| |||||||| ||||| || || || || Sbjct 548 CAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 607 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 ||| || |||||||| | | || ||||| || ||||| || || ||||| || || Sbjct 608 GAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTATGTT 667 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||||||||| || || || || | ||| ||||| ||||||||||||| Sbjct 668 TCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTCACGG 727 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || | || |||||||| | |||||||| |||| |||||| | ||||| ||||| Sbjct 728 ATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACA 787 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || |||||||| | ||| ||||| || ||||||||||| ||||| || || || || || Sbjct 788 CCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACG 847 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | ||| || |||||||| || ||||| | |||||||||||| ||||| ||||| Sbjct 848 ATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACCTTGG 907 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 |||| ||||| |||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct 908 CCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGCAACA 967 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 ||||| || | |||||||| | || | |||||| | || |||| || ||| Sbjct 968 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT-AGCA 1026 Query 36633 G-AGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 36691 | | | ||| | || ||||| | || || ||||| || || || ||||| |||||||| Sbjct 1027 GTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATAACCA 1086 Query 36692 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGA 36751 |||||| || || ||||||||||| |||||||||||||| | ||| || ||||| || | Sbjct 1087 CTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGT 1146 Query 36752 TGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTC 36811 ||||| | || || | |||||||||||| || || || | | || || || ||||| Sbjct 1147 TGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTGGCTC 1206 Query 36812 ACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCAC 36871 ||| |||||||| || || || || || ||||| | || || || | ||| ||| Sbjct 1207 ACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTGATGT 1266 Query 36872 TGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTT 36931 ||| || | ||| ||||||||| | ||| || ||||| || | || | ||||| | Sbjct 1267 TGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGTTTTC 1326 Query 36932 TGTACTTGTAACCCAGTCACATAAAC 36957 || || | ||| ||||| |||| Sbjct 1327 AGTTGAAGTGATCCACTCACAAAAAC 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150442090009060