Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq6015 517 3e-142 >seq6015 Length=1491 Score = 517 bits (572), Expect = 3e-142 Identities = 709/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || || |||||||||||||| || || |||||||||||||||||||| | ||| Sbjct 368 GCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 427 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || |||||||||||| | | | ||| ||||| || ||||| Sbjct 428 GCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAACTGAT 487 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || |||||||| || ||||||||||| || | || | || || | | Sbjct 488 TGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGTGAAC 547 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | | || ||||||| ||| |||||||| ||||| ||| ||||| || Sbjct 548 CAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 607 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || |||||||| | | || ||||| || ||||| || || ||||| || ||| Sbjct 608 GAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTATGTT 667 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||| ||||| || || || || | ||| |||| || | ||||||||||| Sbjct 668 TCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTC--AGTTGTTTCAC 725 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || | ||| |||||||| | || ||||| |||| ||| || | ||||| |||| Sbjct 726 GGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATA 785 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| | ||||||||| || ||||||||||| ||||| || || ||||||| Sbjct 786 CACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATA 845 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 ||| ||| ||||| |||||||| |||||| | |||||||||||| ||| || | Sbjct 846 CGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACCTT 905 Query 5733 GTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTA 5792 | || | ||||| ||||| ||||| | | ||||| || || || ||||| || || | Sbjct 906 GGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGCAA 965 Query 5793 CGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAG 5852 | |||||||| ||||| ||||| | | || | |||||| | || |||| || || Sbjct 966 CAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT-AG 1024 Query 5853 CTG-CGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 | | | ||| | ||||||||| | |||| |||||||| || || || ||||| | | Sbjct 1025 CAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATAAC 1084 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 || || || ||| | || |||||||| || || ||||||||||| ||||| ||||| || Sbjct 1085 CACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAGAA 1144 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 | || | || || |||| ||||||||||| || || || ||||| || | || || Sbjct 1145 GTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTGGC 1204 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || || |||||||| ||||| || ||||| | ||| || | || ||| | | Sbjct 1205 TCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTGAT 1264 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 ||||| || | || || ||||| | ||||| ||||| || | || | ||||| Sbjct 1265 GTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGTTT 1324 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | || ||| | ||| ||||| || Sbjct 1325 TCAGTTGAAGTGATCCACTCACAAAA 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152637110400540