Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq6015 538 1e-148 >seq6015 Length=1491 Score = 538 bits (596), Expect = 1e-148 Identities = 715/990 (72%), Gaps = 2/990 (0%) Strand=Plus/Plus Query 25449 AGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 25508 ||| |||||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 364 AGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 423 Query 25509 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 25568 || |||||||| | ||||| |||||||| | || | || | || || || || Sbjct 424 GTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAAC 483 Query 25569 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 25628 ||| || |||||||| || ||||| || || ||||||||||| || | || | ||| || Sbjct 484 TGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGT 543 Query 25629 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATT 25688 | ||| || | | || ||||||||||| |||||||| ||||| ||| || || Sbjct 544 GAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTT 603 Query 25689 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 25748 || ||| || |||||||| | | || ||||| || ||||| || || ||||| || Sbjct 604 GAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTA 663 Query 25749 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 25808 || ||||||||||| || || || || | ||| ||||| |||||||||| Sbjct 664 TGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTC 723 Query 25809 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 25868 ||| || | || |||||||| | |||||||| |||| |||||| | ||||| || Sbjct 724 ACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAA 783 Query 25869 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 25928 ||| || |||||||| | ||| ||||| || ||||||||||| ||||| || || || || Sbjct 784 TACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 843 Query 25929 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 25988 || | ||| || |||||||| || ||||| | |||||||||||| ||||| || Sbjct 844 TACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACC 903 Query 25989 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 26048 ||| |||| ||||| |||||||||||||| ||||| || || || ||||| ||||| Sbjct 904 TTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGC 963 Query 26049 TACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 26108 ||| ||||| || | ||| |||| | || | |||||| | || |||| || Sbjct 964 AACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT- 1022 Query 26109 AGCTG-AGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 ||| | | | || | || ||||| | || || ||||| || || |||||||| || | Sbjct 1023 AGCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATA 1082 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 |||||||||| || || ||||||||||| |||||||||||||| | ||| || ||||||| Sbjct 1083 ACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAG 1142 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | | |||| | || |||| |||||||||||| || || || | | || || || | Sbjct 1143 AAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTG 1202 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 ||||||| |||||||| || || || || || ||||| | || || || | ||| ||| Sbjct 1203 GCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTG 1262 Query 26348 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 26407 ||| || | ||| ||||||||| | ||| || ||||| || | || | |||| Sbjct 1263 ATGTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGT 1322 Query 26408 TGTTTGTACTTGTAACCCAGTCACATAAAC 26437 | | || || | ||| ||||| |||| Sbjct 1323 TTTCAGTTGAAGTGATCCACTCACAAAAAC 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151981164073640