Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq18 113 3e-20 seq4034 82.4 6e-11 >seq18 Length=189446 Score = 113 bits (124), Expect = 3e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 9133 TCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCA 9192 ||||| || |||||||||||||| ||||| | || | ||| |||||||| | |||||| Sbjct 102944 TCGGAGTGGTTGAACAGCACCACGCCCACCTCCCCGCGGTAGTCCTCATCCACCACACCC 102885 Query 9193 GCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAG 9252 || ||| ||||||||||| |||||| || || || ||||||||||||| || |||||| Sbjct 102884 GCGCCCGTGTCGATGAAGTTCTTGACAGCCAGGCCCGAGCGGGGCGCGACACGGCCGTAG 102825 >seq4034 Length=4767 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 48532 AGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGT 48591 ||||| | ||| || || |||| ||||| || ||||||||||| || || || |||| Sbjct 2017 AGTCGGGGACGCACCGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGT 1958 Query 48592 AATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGAT 48651 | || | ||| | || | || || | |||||| |||||||| || || ||||| || | Sbjct 1957 AGTCCGCTAGCGTGCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGT 1898 Query 48652 CCGTGGGAACGCC 48664 ||| ||||| ||| Sbjct 1897 CCGGGGGAATGCC 1885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380905611955470