Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq6015 728 0.0 >seq6015 Length=1491 Score = 728 bits (806), Expect = 0.0 Identities = 756/986 (77%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||| | ||| |||| ||| ||| || || | || |||||||||||||||| | ||| Sbjct 1347 TGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATG 1288 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||||| | || | ||| || | |||||||| || ||||| || || || ||| Sbjct 1287 ATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCA 1228 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || || |||||||||||| | || || || | ||||| ||||| || |||||||||||| Sbjct 1227 GTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAACATC 1168 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 ||| | |||||||| | || | ||| || ||||||||| | |||||||| || || ||| Sbjct 1167 ATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAATTTGG 1108 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| || |||||||| |||||||| || || ||||| |||| |||||| | || | Sbjct 1107 GAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGTTTGT 1048 Query 162802 CACTTCCTTATCGGAATC-ACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTT 162860 ||||||||| | || | || || ||| |||||| |||||||| | |||| ||| || Sbjct 1047 CACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCCGTTT 989 Query 162861 AGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGT 162920 |||||||||||| |||||| |||||| ||||| || |||||| ||||||| |||||| Sbjct 988 AGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGCTGT 929 Query 162921 GTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTC 162980 ||||| || || || | || |||||||| ||||| || | |||||| | ||||| Sbjct 928 ATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTATCAG 869 Query 162981 TGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTT 163040 |||||||| |||| |||| |||| |||||||| |||||||||||||| |||||||| || Sbjct 868 CGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATT 809 Query 163041 CCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTC 163100 ||| ||| | || || || |||||||| ||||||||| | || ||| ||||||||||| Sbjct 808 CCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTC 749 Query 163101 TCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTA 163160 | |||||||| || | ||| | ||||| ||||| | || ||| ||| | ||||| Sbjct 748 ATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 689 Query 163161 TAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCG 163220 || || ||||||||||| || |||||||| || || ||||| || ||||| ||||| Sbjct 688 CCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGGTCG 629 Query 163221 CTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGC 163280 || |||||||| || || || ||||||||||| |||||| | ||||||||||| ||||| Sbjct 628 TTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGC 569 Query 163281 ATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCT 163340 | || || || | || |||||||| || | ||| | ||||||||||| |||||||| Sbjct 568 TTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAACCT 509 Query 163341 TAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTG 163400 |||||||||||||||||||||||| || || ||| || ||| || | ||||| Sbjct 508 TAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACACTTG 449 Query 163401 GGCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATGCACGAGCGTAATGCTC 163459 |||||| ||| | ||| | || |||| ||||||||||| |||||||||||||| |||| Sbjct 448 GGCAGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTC 390 Query 163460 ACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||||| || ||| | ||| || Sbjct 389 ACAACTTCCCTCTAGACTTAGCTTCT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553037165571600