Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq6015 672 0.0 seq3788 282 5e-71 >seq6015 Length=1491 Score = 672 bits (744), Expect = 0.0 Identities = 740/980 (76%), Gaps = 4/980 (0%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 ||||| || ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | || || ||||| || || ||||||||||| || ||||||| || | || || |||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 |||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 163190 TCTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAATGGGAACTTTCATAT 163248 | | |||||||||| | || | || ||| || ||||| ||||| |||||| | || | Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTC 994 Query 163249 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 163308 || ||||||||||| || |||||| ||| || ||||| || || || || ||||| | Sbjct 993 CGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGC 934 Query 163309 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGC 163368 || || ||| | || || || | || |||||||| ||||| || | ||||| | || Sbjct 933 GCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGT 874 Query 163369 ATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 163428 ||| || || ||||||| |||| | || |||||||| |||||||||||||| |||||| Sbjct 873 ATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCAC 814 Query 163429 CCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 || ||||| ||||| || || |||||||| || ||||| ||| | ||||| |||||||| Sbjct 813 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCAC 754 Query 163489 GGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTAT 163548 || | ||||| || || | ||||||| || ||||||| || ||| ||| | Sbjct 753 GGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 694 Query 163549 GGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 163608 |||||| ||||||||||||||||| |||||||||||||| ||||| || || |||||| Sbjct 693 GGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTC 634 Query 163609 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTG 163668 |||||||| ||||||||||| || |||||||||||| | | ||||||||||| Sbjct 633 GGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTA 574 Query 163669 GCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTC 163728 || || ||||| || |||| || ||||| || || | || | || ||||| ||| Sbjct 573 GCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTC 514 Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAAC 163788 ||||| |||||||||||||||||||| || | | || || |||||||| | ||| Sbjct 513 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAAC 454 Query 163789 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 163848 |||||||||||| | | ||||| ||| | ||||||||||| ||||| ||||||||| Sbjct 453 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 394 Query 163849 GCACACAACTTCCCACTCGA 163868 || ||||||||||| || || Sbjct 393 GCTCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 282 bits (312), Expect = 5e-71 Identities = 368/507 (73%), Gaps = 4/507 (1%) Strand=Plus/Minus Query 165120 CAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTG 165179 ||||| ||||| |||||||| || ||||| ||||| ||||||||||| || ||| | || Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 165180 GGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGAT 165239 || || || || ||| ||||||||| || | || || ||||| ||||||| ||| ||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 165240 GGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 165299 || || || || || || || || | | ||||||| ||||| ||||| || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 165300 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGG 165359 ||||| || |||||||| |||||||| || || || || | || || ||||||||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 165360 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACA--TCCTCTATTG 165417 ||| | || || |||||| | || || || || | ||| ||||||| | ||||| | Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTA--G 2443 Query 165418 GCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAG 165477 | || ||||| | ||||| |||||||||||||| || ||||| || || ||| | | Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 165478 CAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGAC 165537 | || ||||| || || || || || ||||| || ||||||||||| | || ||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 165538 TACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAG 165597 | ||||||||| |||| | || ||||| || ||| | | ||||| ||||||| Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAG 2263 Query 165598 TATTGCCTAGAGGCAACGCCCTTTAAT 165624 |||| || | || ||||| || |||| Sbjct 2262 TATTACCGCGTGGTAACGCTCTATAAT 2236 Score = 235 bits (260), Expect = 6e-57 Identities = 345/486 (71%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||||| | ||| || || || ||||| || ||||| || ||| ||||| | Sbjct 4487 GATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCAGGTTTATTACTTTTC 4428 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || |||||| | || | || |||||| | ||||| ||| |||| || || ||| Sbjct 4427 CCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACTTTCGTAACATCATGG 4368 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || |||||| | ||| |||| || | |||||| |||||| | || |||||||| Sbjct 4367 TATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCTGTA 4308 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || ||||| | ||||| || |||||||| | |||||||||| || |||| Sbjct 4307 TCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAA 4248 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || | ||| || ||||| |||||||| || ||||| ||||| ||| | |||||| Sbjct 4247 GGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTAGCTTTACACGGT 4188 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTA-- 164976 || || | ||||||| || ||| | | |||||||| | || ||| ||| ||| Sbjct 4187 GCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCTCGT-TCA---GTAAA 4132 Query 164977 --TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 165034 | ||||| || || |||||||| ||||| | || ||| |||| ||||| || || Sbjct 4131 CTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTTGTTGCTGTTTT 4072 Query 165035 CCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 165094 ||| || |||||| | ||||| || ||||||| || ||||| |||||| || || || Sbjct 4071 CCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTTGGTGTAGCTGC 4012 Query 165095 AATCTT 165100 |||||| Sbjct 4011 AATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563161093573200