Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq222 206 5e-48 seq3574 138 2e-27 seq32 125 1e-23 seq34 123 5e-23 seq263 91.5 3e-13 >seq222 Length=84561 Score = 206 bits (228), Expect = 5e-48 Identities = 446/657 (68%), Gaps = 24/657 (4%) Strand=Plus/Plus Query 213479 AGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCAT 213538 ||| || || ||| ||||||||||| || ||| ||| | | | |||||||| | Sbjct 74374 AGGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAG 74433 Query 213539 GATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGC 213598 |||||| ||||| ||||||||||| |||||||||||| | || ||| ||| |||| Sbjct 74434 GATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGG-TTGCTCTTGC 74492 Query 213599 GTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTA 213657 | | ||| ||||||||||| |||||||| |||| || ||||| | ||| | |||| | Sbjct 74493 GGTTGCAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGA 74552 Query 213658 TCTGGC--TCCAGAGGTACCTGGCCTTGA-CCACCCGCCTGACAGCTCCGGGCGTAGCCT 213714 |||| ||| || | | ||| || | | || | || || ||| || Sbjct 74553 --TGGCAAACCACAGCTGCTGGGCGCGGATCGTCTTGCGCGCACGCCCCTCGCG----CT 74606 Query 213715 CGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCG--G 213769 |||| | ||||||| | || |||| ||||||| | |||| ||||| | | Sbjct 74607 CGTAGCGCGTGTAGAGCCGCTCAAACTCGTCGCCCCAG---CAGTCCGCTAGTCCAGGCG 74663 Query 213770 ACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829 | | | ||| || | ||| ||| ||| | || | ||| | ||||||||| || Sbjct 74664 CCTCGTT--GGGGCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAG 74721 Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 ||| |||||||| || ||||| ||||| | | | ||| || || ||| Sbjct 74722 GTCGTTGACCCACATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTT 74781 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 |||||||| || | |||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 74782 CTTGCGCAGCTCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAA 74841 Query 213950 GGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCG 214006 || ||| | ||| ||| ||||||||||| | ||| ||| |||| ||| Sbjct 74842 CGCCCCCTTGCGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCG 74901 Query 214007 CAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066 ||| | |||||| | ||||||||| |||||||| || ||||| ||||||| ||| Sbjct 74902 CAGCATGGGTACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGC 74961 Query 214067 CCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 | | || | ||||| || || |||||||| |||| |||||| || | ||||| Sbjct 74962 ACGGATGTCGTGAATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCA 75018 >seq3574 Length=6273 Score = 138 bits (152), Expect = 2e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| |||||| ||||| | ||||| ||| ||||| |||||||||||| ||||||||||| Sbjct 5821 AGCAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAG 5762 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||| || ||||||| || | || ||||||||||| || | ||| ||||| ||| Sbjct 5761 GTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAG 5702 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGC 48273 || |||||||||||||| |||||||| || Sbjct 5701 AAAAAGATGCCCTCCACGGCCGCGAAGGC 5673 >seq32 Length=161680 Score = 125 bits (138), Expect = 1e-23 Identities = 500/764 (65%), Gaps = 30/764 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || | ||||| |||||||||||||| |||| | |||||| || Sbjct 59113 CTGGTAGTCAGAAACGCGCTTCTCGAAGAAGTTTGTCTTTCCCTGGAGAGAGATGAGTTC 59172 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||| || ||| || |||| |||| | ||| | ||| ||| | |||| | Sbjct 59173 CATCCAGTCGAAAGGATTGGCGGTGTGGAAGACCT-TCTCATTGCCAAGGCACACCAGGA 59231 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | || |||||| |||||||||| | |||||| ||||||||| ||||| | Sbjct 59232 GCCTGTCAGCGACGAACTCGATGTACTGCTCCATGAGCTGCGCGTTCATGCCGATGAGCG 59291 Query 48018 ACACGGGCAAAGCCTTTGTGA-GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||||||| | | || ||| ||| || ||||| | ||||| ||| | | ||| Sbjct 59292 ACACGGGCAGCGATTCACAGATGAAGCTCTTT-TCTATGCGGACGGCATCCACTATGATC 59350 Query 48077 TGCTT-AACG-CGGGACT-CTGAGG---GTTTGTTGCG-CAGGTGCTTGGCATAGAGCAT 48129 |||| || | | | | | |||| | | ||| ||| |||| ||||| | Sbjct 59351 -GCTTCAATGTCAGCATTGCTGATGCGCGCCGACGGCGGCAGCATCTTG---TAGAGGAA 59406 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| | ||| | || |||||||| ||||||| | || || ||| ||| Sbjct 59407 GCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTGAG 59466 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||||| ||| | | |||||||||||| || || ||| ||||| ||||| || Sbjct 59467 CCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAAAA 59526 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||||||||| || || || || || | | | |||| | | | | || Sbjct 59527 GATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGAC--GCCT-C 59583 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | |||||| ||||| | | | |||||||| ||||| ||||| || Sbjct 59584 GATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAATGGCGCG 59643 Query 48370 GAAGAG--CTTCTTGCACTCACCTG--CGTCCGCAACATAGGTAGT-GAGCAGCTTTGCG 48424 ||||| |||| || | || | ||| | || || || | |||| | | Sbjct 59644 AAAGAGACGGTCTT----TCTCGTGGACATCCTTGATGTA-GTGGTCCAACAGCAGGGAG 59698 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||| |||| ||| || ||||| || ||||||||||| ||||| || | ||||| Sbjct 59699 TACGTCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCCTCT 59758 Query 48485 AACACCTGCACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | ||||| || | | | ||| | | ||| ||||| ||||| || ||||| || Sbjct 59759 GGGAGTTGCACCTC-GCGCATGAAGCGCGATGCCAGGTTCTCGTTGACGATGCCATCAGA 59817 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGT 48587 | ||||||||| || || || || || || || || |||||| Sbjct 59818 CGTAGCAAAGAAAGCGAGCACGTGCTTGAGAAAGTGCTGCTCGT 59861 >seq34 Length=156822 Score = 123 bits (136), Expect = 5e-23 Identities = 125/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||||||||| |||| |||||| || ||| ||||| | || | | ||| ||| Sbjct 81402 CATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCGCCTCCTCCTT 81461 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| |||||||| || || |||||||| | ||| |||||||| ||||||||||| Sbjct 81462 GCCGTGGTTCTTGCGCAGCTCCAGGAAGTCAAACACGTCAGCGTGCCAGGGCTCCATGTA 81521 Query 213941 GATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCAC 213979 |||||| ||||||||| | ||| ||||||||||||||| Sbjct 81522 GATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 81563 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||| Sbjct 80890 GTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 80949 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||||| | |||||||| |||||||||||| || ||||| | |||| Sbjct 80950 TTGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTGG 81009 Query 213648 GACACCAGTAT 213658 | | |||| || Sbjct 81010 GCCTCCAGGAT 81020 Score = 111 bits (122), Expect = 3e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 212866 CGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGT 212925 || |||||| |||| || | |||| | | |||||| ||||||| | ||| | Sbjct 79562 CGCTCCAGACGCCCATGCGGTTCAGGTCGTGCAGCAGGTGCTGGTTGACGACGGTGAACT 79621 Query 212926 CACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGT 212985 | || || ||||| | | | ||| | ||| || ||||||||||| | || |||||||| Sbjct 79622 CGCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGT 79681 Query 212986 TCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCA 213045 | ||||| ||||| |||||||| ||||||||||| |||||||| || ||| | || Sbjct 79682 TGCCCAGGATCTGGCTGGTGCTGGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCA 79741 Query 213046 CTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGC-CAGA 213097 | ||||| | |||| | || ||| | |||||||| || |||| |||| Sbjct 79742 CGCCGTGGCGGGCGATCTTGTCGCGCAGCGCCGCCCAGTCGCACCTGCGCAGA 79794 >seq263 Length=80451 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/116 (79%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 48110 AGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATG 48169 ||||||||| | || ||| |||||||||||| | ||||| ||| ||||| ||||||||| Sbjct 27959 AGGTGCTTGT-ACAG-GCA-GCAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATG 27903 Query 48170 AGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAAT 48225 || |||||||| || | || || ||||||| || | || ||||||||||| || Sbjct 27902 AGTACGTTGGAAAACGACAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 27847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931452571737600