Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq32 205 2e-47 seq222 163 5e-35 seq3574 141 2e-28 seq34 107 4e-18 seq263 91.5 3e-13 >seq32 Length=161680 Score = 205 bits (226), Expect = 2e-47 Identities = 388/564 (69%), Gaps = 13/564 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| || | ||||| ||||| ||| | |||||| ||||| |||||||||||| | Sbjct 59949 TGGCAGTTTTACAAAAAGGCCCAAGCCAGCTTCTGGACTGCCGAGGAGATTGATCTGTCA 59890 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 |||||| | ||| ||| || || ||||||||||| ||||||||| ||||| Sbjct 59889 CAGGACAAG------TGGGACGAGCTGCGCAGCGACGAGCAGCACTTTCTCAAGCACGTG 59836 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || |||||||| | |||||||| || || |||||||| ||| | | |||| Sbjct 59835 CTCGCTTTCTTTGCTACGTCTGATGGCATCGTCAACGAGAACCTGGCATCGCGCTTCATG 59776 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | || ||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 59775 CGCGAGGTGCAACTCCCAGAGGCGCGTTGTTTTTACGGATTCCAGATCGCAATTGAGAAC 59716 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCT-TCTGATGACGTACATTACAGACGTCGCCGAGAG 25778 || ||| ||| ||| || ||| | || || ||||| | || ||| ||||| Sbjct 59715 GTCCACGGCGAGACGTACTCCCTGCTGTTGGACCAC-TACATCAAGGATGTCCACGAGAA 59657 Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838 ||| || || ||| | ||||| ||| || || | | | ||||| ||||| Sbjct 59656 AGACCGTCTCTTTCGCGCCATTGAGACAATGCCATGTGTGACCCAAAAGGCCACATGGGC 59597 Query 25839 CATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGC 25898 ||||||||||| | || | | | ||| | | ||| |||| || ||||| || Sbjct 59596 GTTGAAGTGGATCGA-GGC--GTCGGATGTGTTCGCCAGGCGCTTGGTGGCATTTGCAGC 59540 Query 25899 TGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGG 25957 || ||||||||||||||| || || || ||| ||||||||||||||||| | | Sbjct 59539 GGTCGAGGGCATCTTTTTCTCGGGCTCATTCTGC-GCCATCTTCTGGCTCAAAAAACGCG 59481 Query 25958 GGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACA 26017 || |||||| ||||| |||||| || ||||||||| ||||||||||||| ||| Sbjct 59480 GGCTCATGCCGGGGCTCACCTTTTCAAATGAGCTCATCTCTCGGGACGAGGGTCTACACT 59421 Query 26018 GAGATTTTGCCTGCCTGCTCTACA 26041 | || ||||| ||| | ||||||| Sbjct 59420 GCGACTTTGCGTGCTTCCTCTACA 59397 >seq222 Length=84561 Score = 163 bits (180), Expect = 5e-35 Identities = 613/948 (65%), Gaps = 30/948 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| || || ||| |||||| | |||| |||| | |||||| || |||||| Sbjct 74390 GCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGGATCTCCGTGCAGAGG 74449 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||||||||||||||| ||||| || | || || |||||| ||| | |||||| Sbjct 74450 TTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCGGTTGCAGGAATCCTTG 74509 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | || || ||||| | ||| || |||| || ||| || | Sbjct 74510 TATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATGGCAAACCACAGCTGC 74569 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||||| | |||| ||| |||| ||||| || | || | || |||||| Sbjct 74570 TGGGCGCGGATCGTC---TTGCGCGCACGCCCCTCGCGCT---CGTAGCGCGTGTAGAGC 74623 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC-GGGACACATCAG 222009 ||||||| || || | || | || || || | ||| | ||| || | || Sbjct 74624 CGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGG-CGCCTCGTTGGGGCAAAAGAG 74682 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||| | | | | | ||||| ||||||||||||||| || ||||| || | Sbjct 74683 CGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCACATGGCAAG 74742 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || | || | | ||| |||||| |||| ||| || | ||| || | || || Sbjct 74743 GAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGCAGCTCGATGAAGTC 74802 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 |||||||||||||||||| |||||||| || | ||| | || || ||||| ||| Sbjct 74803 AAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTGCGCTTTCCGCC 74862 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| ||||| | | || |||| |||| ||| || | ||||| | ||||| Sbjct 74863 CCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGTACGATGCCGTT 74922 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA--GAC 222307 ||| ||||||||||| || || | ||| ||| | | || | | | ||| Sbjct 74923 GGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGT--CGTGAATGGAC 74980 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTC-TTGAGAGTGTCCATGAT 222366 | |||||| ||||| |||| || || || | ||||| ||| ||||| ||||| || Sbjct 74981 AGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCA-CTCTTTGAGCGTGTCATAAAT 75039 Query 222367 GCCCTCCAT--------AG-AGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 |||||| || || || |||| | || || ||| || || || |||||| Sbjct 75040 GCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGCACCAGGAAGCACGAGCTCATCTG 75099 Query 222418 AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 || | | | | ||| || |||||||| ||||| || || || | || Sbjct 75100 AGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTGAAACGGCGCTCCGA 75159 Query 222478 CATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCA 222537 |||||| | |||||||| | | | || | | || || | |||| || || ||| Sbjct 75160 CATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGGATGCCCAGCGCGAC 75219 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCAC-AGGAC-CCTTGGAGCTGGAGAGCAGGTAC 222595 | |||| ||||| ||| || | ||| || | | || | | | | ||||||||| Sbjct 75220 GCGCATGAGCATGTGCTGCGGGCGCTCAACGATCTCTCCGTTTATCCG--CAGCAGGTAC 75277 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTG 222643 || |||||| |||||||||||||| |||| | || |||||||| Sbjct 75278 GAGCGTTCCAGTGTCTTGAACCCAAAATAGTCGTACTCGTAGTCTCTG 75325 >seq3574 Length=6273 Score = 141 bits (156), Expect = 2e-28 Identities = 141/179 (79%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGG 25933 |||||| || || ||||| || || |||||||||||||||||| ||| || || ||| Sbjct 5660 CGAGCGCCTCGTGGCCTTCGCGGCCGTGGAGGGCATCTTTTTCTCCGGCTCCTTCTGC-T 5718 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || ||||||||| || ||| ||||||||||||| Sbjct 5719 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCA 5778 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG--GGCCACT 26050 ||||| | |||||||| || ||| | || || ||||||||||| | || | ||||||| Sbjct 5779 TCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTGCTATTCAGGTAGGCCACT 5837 >seq34 Length=156822 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||| ||||| ||||||||||| | | ||||| || | || ||| ||||||| Sbjct 81402 CATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCGCCTCCTCCTT 81461 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||||| ||| || | ||| |||| || ||||| | |||||||||||| ||||||| || Sbjct 81462 GCCGTGGTTCTTGCGCAGCTCCAGGAAGTCAAACACGTCAGCGTGCCAGGGCTCCATGTA 81521 Query 222160 GACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || ||| | ||||| |||||| ||| ||||| ||||| Sbjct 81522 GATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 81563 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166 || ||||| ||| || || ||| || ||||| ||||| | | | ||| | ||| || Sbjct 79596 CAGGTGCTGGTTGACGACGGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGA 79655 Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226 ||| | || || | || ||||||||||||||||||||| |||||||| |||||||| Sbjct 79656 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCCGTGGGCAT 79715 Query 221227 GGGTGCCACCAGCAGACTGTTGCGCA 221252 ||| ||||||||||| |||||||| Sbjct 79716 GGGCGCCACCAGCAGCGAGTTGCGCA 79741 Score = 95.1 bits (104), Expect = 2e-14 Identities = 186/272 (68%), Gaps = 5/272 (2%) Strand=Plus/Plus Query 221745 TGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 |||| |||| |||||||| || || |||||| |||||||||||| ||||||| | | Sbjct 80888 TGGTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCT 80947 Query 221805 GATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCT 221864 | || ||||| ||| ||||||||||| ||||| |||| ||| ||||||| || Sbjct 80948 GGTTGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCT 81007 Query 221865 GAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCC 221923 | ||| |||| || | ||| || | ||| |||| |||| | |||| | ||| Sbjct 81008 GGGCCTCCAGGATGGCGAACCACAGCT-GCTGCGCGCGCACCACGCGCTTGGCCTTGCCC 81066 Query 221924 TCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGG 221983 |||| | || ||| | | || ||| || ||||| || || | ||| ||||| Sbjct 81067 TCGGAC---TCGTACTTGTTGTACAGCTCCTCGAACTTCTCGCCCCAGCTGTCGGCCAGG 81123 Query 221984 CCTGGACACCTGGCGGGACACATCAGACTCCA 222015 || | |||| | ||| || | ||| ||||| Sbjct 81124 CCGGCACACTCGTTGGGGCAGAACAGGCTCCA 81155 >seq263 Length=80451 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || ||||||||| |||| |||||||||| |||| Sbjct 27845 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGTCGTTTTCCAACGTACTCA 27904 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGC 26031 ||||| | |||||||| || ||| | || ||||||||| Sbjct 27905 TCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTGC 27942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928764803241600