Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq6015 706 0.0 seq3788 262 4e-65 >seq6015 Length=1491 Score = 706 bits (782), Expect = 0.0 Identities = 746/980 (76%), Gaps = 2/980 (0%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||| ||||||| || | || || || || |||| ||||| || || | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 ||||||||| |||||| | || ||| ||||| | ||| ||| | |||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 || || |||||||| || ||||| || ||||| |||| ||||| | ||||||||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||||||| | ||||| || | || | |||||||| ||||| | ||||||||||| || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| ||| ||||||| |||||| | |||||||||||||||||||| || | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 8547 TTTCCACTTCCTCCTTGGCGTCTT-TGCTTATATGGGTCGTGAATGGGAACTTTCTTACC 8605 || |||||||| | || || | |||| | ||||||||||| |||||| | |||| || Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCT-ACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 8606 GCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTG 8665 | | || |||||||| |||||| |||||| ||||| ||||| || || || ||| | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 8666 CTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTA 8725 |||||||| | || || || |||| |||||||| ||||| |||||||||||| | |||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 8726 TCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACC 8785 || |||||| ||||||| ||| | || ||||| ||||||||||||||||| ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 8786 CCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATG 8845 | ||||||||| | |||||||||||||| || || || || | || || |||||||| | Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 8846 GTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATG 8905 ||||| | |||||||| ||| | | ||||| || || |||| ||| || ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 8906 GCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTG 8965 | ||| || ||||||||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 8966 GTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCG 9025 |||| || ||||||||||| || || || ||||| ||| | || || |||||||| | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 9026 CTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCA 9085 |||| ||||| || | || || ||||| || || | || | || || |||||||||| Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 9086 ACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACA 9145 |||| || || |||||||||||||| || || | ||| |||||| || || | |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 9146 CCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACG 9205 | ||||||||| | | ||||| || | ||||||||||| |||||||| | |||| Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 9206 CACACAACTTCCCGCTTGAC 9225 | ||||||||||| || ||| Sbjct 392 CTCACAACTTCCCTCTAGAC 373 >seq3788 Length=5474 Score = 262 bits (290), Expect = 4e-65 Identities = 369/518 (71%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 10318 TCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGC 10377 ||| || |||| || || ||||| ||||| || || || ||||| |||||||| || || Sbjct 2750 TCTATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGC 2691 Query 10378 TGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACT 10437 |||| | | || || || | ||| || || ||||| | ||||||||||||||| | Sbjct 2690 TGGTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATT 2631 Query 10438 TTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGA 10497 | ||||||| || || ||||| ||| || || | || || | ||||| Sbjct 2630 ATTCGAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGA 2571 Query 10498 GACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAG 10557 || || || ||||| || || |||||||||||||| || || ||||| | ||||| Sbjct 2570 AACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTC 2511 Query 10558 CAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTC 10617 || || || ||| | || ||||| ||||| || || || || | ||| ||||||| Sbjct 2510 TAACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAG 2451 Query 10618 TTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGA 10677 | || | || | ||||| | ||||| || ||||||||||| || || ||||| ||||| Sbjct 2450 TGCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGA 2391 Query 10678 GATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAA 10737 ||| | || | ||||| ||||| || || || |||||||| || || |||||||| || Sbjct 2390 AATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAA 2331 Query 10738 CGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCC 10797 ||||||| | ||||| |||||||| | |||||||| |||||| | | || ||||| Sbjct 2330 CGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCC 2271 Query 10798 AGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGATATT 10835 |||||||| | || | ||||| || || | || || Sbjct 2270 TGAAGAAGTATTACCGCGTGGTAACGCTCTATAATTTT 2233 Score = 219 bits (242), Expect = 4e-52 Identities = 354/509 (70%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 9811 ATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTC 9870 ||||||||| | |||||||||||| | ||| || || || ||||| |||||||| Sbjct 4503 ATGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 9871 TGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTAC 9930 || || | ||||| || |||||| ||||| | ||||| ||| | ||||| || || Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 9931 GTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTT 9990 || || || ||||| || || || | || | | |||| | || ||| ||| || Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 9991 CCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 10050 | | || || ||||| ||||| ||||| | ||||| || |||||||| | |||| Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 10051 GGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTT 10110 |||||| || |||| || || ||| || ||| || ||||| || | ||||| || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 10111 TGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGC 10170 || || | ||||| || || | ||||| |||||||||||| | |||||||| | || Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 10171 GAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTT 10230 | | | | | || || || || ||||| || || || | ||| ||| |||| || Sbjct 4143 TCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 10231 TGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTT 10290 ||| ||||||||| || || ||| | || || || ||||||||||||| || || || Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 10291 CGGCGTCGCGGCGATTTTCCGCTTCCTTC 10319 || || || || || ||||| ||| ||| Sbjct 4023 TGGTGTAGCTGCAATCTTCCGTTTCATTC 3995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516435518160000