Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq6015 715 0.0 seq3788 356 3e-93 seq6189 105 7e-18 >seq6015 Length=1491 Score = 715 bits (792), Expect = 0.0 Identities = 755/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||| |||| || || ||||| | || | ||||||||||| || | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || || | || |||| || || || |||||||| || ||| | | |||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || |||||||| || || ||||| || || ||||||| || | || || ||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 ||||||| | |||||||| ||||| ||||||||||||| ||| | ||||||||||| || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| || | ||| ||||| ||| | |||||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 161175 GTTCCACTTCCTGATTGGCATCTA-TGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233 | |||||||| | || | || |||| |||||||||||||||||||| | |||| || Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCT-ACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 || | || |||||||| ||||| || || ||||| ||||| || |||||||| || | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | || ||| | || || || | || |||||||| ||||| |||| |||||| | || | Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 || ||||| ||||||| |||| | || |||||||| ||||||||||| || ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 | ||||| ||| | || || || ||||| ||||| ||||| | ||| ||||||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533 |||| | ||||| || ||| | | |||||||| || |||||||| || ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593 ||||| || |||||||||||||| || ||||||||||| || || ||||| ||||||| Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653 ||||| | || |||||||||||||| ||||||||||| || || | ||||||||||| | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 161713 |||||||||| ||| | || || |||||||| || | || | || ||||| |||| Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 161714 ACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACA 161773 |||| || ||||||||||||||||| || | || || || ||| || | |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 161774 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATG 161833 | ||||||||| | ||||||||||| | || |||||||| ||||||||||| || | Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 161834 CTCACAACTTCCCTCTTGACCTTGCTGCT 161862 |||||||||||||||| ||| | ||| || Sbjct 392 CTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 356 bits (394), Expect = 3e-93 Identities = 383/507 (76%), Gaps = 0/507 (0%) Strand=Plus/Minus Query 162628 TCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCC 162687 ||||||| |||||||||||||| || || || || ||||||||||| ||||| ||| | Sbjct 2742 TCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTT 2683 Query 162688 TTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAG 162747 | |||||||| || | | ||||||||| || | || || ||||| ||| | | ||||| Sbjct 2682 TAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAG 2623 Query 162748 ATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATT 162807 |||| || || ||||| || || || || | ||||||| |||||||| || | Sbjct 2622 ATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACT 2563 Query 162808 CGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGC 162867 | ||||| || || ||||| ||||||||||| ||||| ||| | ||||| |||||||| Sbjct 2562 CAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGC 2503 Query 162868 GTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCG 162927 ||||||| || ||||| ||||| || |||||||| | ||| || |||| ||| || | | Sbjct 2502 GTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAG 2443 Query 162928 GTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTG 162987 || || |||| | ||||| || ||||||||||| ||||| ||||| |||||| | |||| Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 162988 CGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGAC 163047 | || |||||||||||||| || || |||||||| || ||||| ||||| || ||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 163048 TTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGG 163107 | || || ||| | || | ||||||||||| || | || ||||||||||| | Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAG 2263 Query 163108 TCTTGCCAAGAGGCAACGCTCTATGAT 163134 | || || | || |||||||||| || Sbjct 2262 TATTACCGCGTGGTAACGCTCTATAAT 2236 Score = 248 bits (274), Expect = 1e-60 Identities = 360/508 (71%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 162114 TGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 162173 |||||||||| | ||| |||||||| |||||||||||| ||||| || ||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 162174 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 162233 || | | ||||| || |||||| |||| || || |||||| | ||||| || ||| Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 162234 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTT 162293 ||||| || |||||||| || || | || | ||| || | || ||| ||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 162294 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGG 162353 | ||||| || || || || || ||| || ||||| || |||||||| || | ||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 162354 GGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTT 162413 ||||| || ||||||| ||||||| || ||||| |||||||| || | ||| | || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 162414 GTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCA 162473 || || | ||||| || ||| || | || || || ||| | | ||||||||| | || Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 162474 CGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGT 162529 || || ||| | ||||| || || |||||||||||||||| || ||| |||| Sbjct 4142 CG----TTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGT 4087 Query 162530 ATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTC 162589 ||| ||| |||||| || || || || || || ||||| |||||||| || || Sbjct 4086 ATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 4027 Query 162590 GTTCGGGGTCGCAGCAATCTTCCGATTC 162617 || || || || ||||||||||| ||| Sbjct 4026 CTTTGGTGTAGCTGCAATCTTCCGTTTC 3999 >seq6189 Length=1385 Score = 105 bits (116), Expect = 7e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 157686 TTTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTT 157745 || ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 620 TTAACGGGATGTAGCGCAGCTTGGTAGCGCATGTGCTTTGGGAGCATAGGGTCGCAGGTT 561 Query 157746 CGAATCCTGTCACCCCGACTTAT 157768 |||||||||||| ||||| |||| Sbjct 560 CGAATCCTGTCATCCCGATTTAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547700025272400