Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq6015 536 4e-148 >seq6015 Length=1491 Score = 536 bits (594), Expect = 4e-148 Identities = 714/989 (72%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 |||||||| ||||| |||||||| ||||| |||||||||||||| ||||| | || | | Sbjct 365 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 424 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | ||| ||||| || || || | ||| | |||||| Sbjct 425 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAACT 484 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||||||||| || || || || ||||||||||| || | || | || || Sbjct 485 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGTG 544 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | | || ||||||||||| | |||||| |||| | ||||| Sbjct 545 AACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTG 604 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || ||| || |||||||| | | || ||||| || ||||| || || || || || Sbjct 605 AATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTAT 664 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||||||||| ||||| || || | ||| || || ||||| ||||| Sbjct 665 GTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTCA 724 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 | || | || |||||||| | |||||||| |||| |||||| | ||||| ||| Sbjct 725 CGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAAT 784 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || |||||||| | ||| ||||| || ||||||||||| ||||| || ||||||||| Sbjct 785 ACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAT 844 Query 18312 ACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCT 18371 |||| |||||| |||||||||||||| ||||| | |||||||||||| ||||| ||| Sbjct 845 ACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACCT 904 Query 18372 TGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 || |||| || ||||| | ||||| | | || || |||||||| || || |||||| Sbjct 905 TGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGCA 964 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||| ||||| || |||||||||| | || | |||||| | || ||||||| | Sbjct 965 ACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT-A 1023 Query 18492 GCTG-CGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 || | | || | || ||||| | || || ||||| || || || ||||| ||||| Sbjct 1024 GCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATAA 1083 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||||||||| || || ||||||||||| |||||||||||||| | ||| || |||||||| Sbjct 1084 CCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAGA 1143 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | |||| | || |||| ||||||||||| || || || | | || || || || Sbjct 1144 AGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTGG 1203 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||| |||||||| ||||| || || |||||||| | || || || | ||| ||| Sbjct 1204 CTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTGA 1263 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 | ||| || | ||| ||||||||| | ||| || ||||| || | ||| | ||||| Sbjct 1264 TGTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGTT 1323 Query 18791 GTTTGTACTCGTAACCCAGTCACATAAAC 18819 | || || | ||| ||||| |||| Sbjct 1324 TTCAGTTGAAGTGATCCACTCACAAAAAC 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151306019317660