Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq6015 664 0.0 seq3788 334 1e-86 >seq6015 Length=1491 Score = 664 bits (736), Expect = 0.0 Identities = 740/992 (75%), Gaps = 4/992 (0%) Strand=Plus/Plus Query 103168 TGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACC 103227 || || ||| | ||| || ||||||||||||||||||||||||||||| ||||||||||| Sbjct 361 TGAAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC 420 Query 103228 CAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAG 103287 | ||| ||||||| | ||||||||| ||||| || |||||||| || || | Sbjct 421 TAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTAC 480 Query 103288 GATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGC 103347 | || |||||||||||||| ||||| |||||||| ||||| || || ||| | || Sbjct 481 AACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGC 540 Query 103348 GGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTT 103407 |||||||| ||||| | ||||| | ||||| Sbjct 541 TGTGAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTT 600 Query 103408 GTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTT 103467 ||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 601 GTTGAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTT 660 Query 103468 GTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGT 103527 |||||| ||||| ||||| || || |||||| | ||| ||||| ||||||| || Sbjct 661 GTATGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGT 720 Query 103528 CTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACC 103587 ||||| | | ||| || ||||| | ||||||||||| ||| ||| | ||||||||| Sbjct 721 TTCACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACC 780 Query 103588 GAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTG 103647 || || |||||||| || | ||||||||| |||||||| || ||||| || || ||||| Sbjct 781 AAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTG 840 Query 103648 GAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGA 103707 ||| || | |||| ||||||| || || ||||| ||||||||| |||| ||||| || Sbjct 841 GAATACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGA 900 Query 103708 ACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTA 103767 |||||| |||| ||||| || |||||||| ||| || || || || ||||| ||||| Sbjct 901 ACCTTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTA 960 Query 103768 TGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCAT 103827 || ||| |||||| || ||||| || | |||| | || |||||||||||||| ||||| Sbjct 961 AGCAACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCAT 1020 Query 103828 ATATGCA-TAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTAT 103886 || ||| || | || | |||||||| | || | |||||| ||||||||||||| | Sbjct 1021 GTA-GCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGT 1079 Query 103887 ACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGT 103946 | | |||||| ||||||| || ||||||||||| || |||||||| | |||||| |||| Sbjct 1080 ATAACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGT 1139 Query 103947 TGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006 | || | || | || ||||| | |||||||||||||||||| | || ||||||| | Sbjct 1140 TAGAAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATA 1199 Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065 | || ||||| || || ||||| || || || || || || | |||||| | |||||| Sbjct 1200 CTGGCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATA 1259 Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125 | ||| ||||| | | ||| |||||||| | |||||||||||||| | || | | Sbjct 1260 CTGAT-GTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAA 1318 Query 104126 CGGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 ||||| | || || || | |||||| || || Sbjct 1319 CGGTTTTCAGTTGAAGTGATCCACTCACAAAA 1350 >seq3788 Length=5474 Score = 334 bits (370), Expect = 1e-86 Identities = 374/500 (75%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || ||||| |||||||| ||||| | ||| || ||||| || Sbjct 2241 AGAGCGTTACCACGCGGTAATACTTCTTCAGGGAATACTAGACGTTCGTGAGGTTGGTCT 2300 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || | |||||||| || || ||||| || Sbjct 2301 TGCGCAGCCATCCAAGCACGGATACCTTCGTTAAGAAGGATGTTTTTAGTATAGAAAGTT 2360 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 |||||||| || ||||| || || | ||| ||||| ||||| |||||||||||||||||| Sbjct 2361 TCGAACTCAGGGTCTTCAGCAGCACGGATTTCTTGTGATACGAAGTCATAAGCACGAAGG 2420 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| | ||||| || ||| | | ||| |||| || ||| | || ||||| || Sbjct 2421 TTAAGAGCTAAACCAACAACACCTAGAGCACTCATCCAAAGCCCCGTCACGGGAACTAAA 2480 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 ||||| ||||| || ||||| | ||| ||| || || | |||||| ||||| |||||| Sbjct 2481 AGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAAAGCTACACCAAAAATTTGTGACCAG 2540 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||||||||| |||||||| ||||| ||||| | ||||| | | ||| || | Sbjct 2541 AAACGGTTTGCTGTTACCATTGAGTAAGTTTCTTCAGCCTGTGTAGGGTTGAAGGCACGG 2600 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || ||||| || ||||||||||| | | ||||| || ||||| ||||||| || Sbjct 2601 AACGTGTTAGCACCGTCACCATCTTCGAATAATGTGTTTTCTACAGTAGCACCGTGAATA 2660 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | | | || || || | | ||| || ||||||||||| ||||||||||| || Sbjct 2661 GCACATAATAAAGCACCACCTAAAACACCAGCTACACCCATCATGTGGAATGGGTTCAGT 2720 Query 102190 GTCCAGTTATGGAAGCCCTG 102209 |||||||||||||| || || Sbjct 2721 GTCCAGTTATGGAAACCTTG 2740 Score = 210 bits (232), Expect = 3e-49 Identities = 340/484 (70%), Gaps = 4/484 (1%) Strand=Plus/Plus Query 102229 AATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAG 102288 || || || || |||||||| || ||||||||||||| || || || | || || Sbjct 4006 AAGATTGCAGCTACACCAAAGCTAGGAGCAAAGAACCAACCTGATTGACCTAATGGGTAA 4065 Query 102289 ATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGA 102348 || || || ||| ||||| |||| || ||| | ||||| |||||||| || || ||| Sbjct 4066 ATTAGGAAAACAGCAACAAATACAGAAATTGGCGCTGAGAAAGCAATAGCGTTATATGGA 4125 Query 102349 CG-AATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAA 102407 || || | | | ||| ||| | || || || | | ||| || ||||| | | ||| Sbjct 4126 CGTAAGTTTACTGAACG-AGCAATTTCAAACTGTCTTAACATAAAGCCAATTAATGAAAA 4184 Query 102408 TGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGG-ACCCACCTGACGAAAT 102466 |||||||| | ||| || || ||||| | || |||||||| ||| || || ||| | Sbjct 4185 AGCACCGTGTAAAGCTACGAATGCCCATAAACCACCAAGTTGACACCAACGTGT-GAAGT 4243 Query 102467 CTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCG 102526 | ||||||||||| |||||||||| | |||||||| || ||||| || ||||| | Sbjct 4244 CACCTTGAGCTTCTGGACCCCAAACAAATAGAAGAGAGTGTGCCATACTGTTTGCAGGTG 4303 Query 102527 TTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGG 102586 |||| ||||| || || | ||| ||| |||||| | |||| || || | || || | Sbjct 4304 TTGATACAGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCATGTG 4363 Query 102587 TATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAG 102646 ||||||| || || | || || || ||||| | ||| || || | ||| | |||||| Sbjct 4364 TATACCATGATGTTACGAAAGTTGTACCAGTTAACCAACCACCTAGTGCAAAGTAAGCAC 4423 Query 102647 TGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGT 102706 || ||||| | || || |||||||| ||||| || || || ||| | | ||||| Sbjct 4424 AAGGGAAAAGTAATAAACCTGACCAACCTACAAATACGAAACGGTCTTGACGTAGCCAGT 4483 Query 102707 CATC 102710 |||| Sbjct 4484 CATC 4487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633459038641200