Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq6015 560 3e-155 >seq6015 Length=1491 Score = 560 bits (620), Expect = 3e-155 Identities = 720/988 (73%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 21468 GATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGG 21527 || || | ||| || ||||||||||| ||||| ||||| ||||| || || | || | | Sbjct 365 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 424 Query 21528 TTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGA 21587 || |||||||| | ||||| ||||| ||||| | || | || | | ||| | Sbjct 425 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAACT 484 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||||||| ||||||||||| || | |||||||||||| || || | || | || | Sbjct 485 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGTG 544 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 ||||||||||| | ||| ||||| ||||| || ||||| || | ||| || || || Sbjct 545 AACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTG 604 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAA 21767 || ||| ||||||||||| | ||||| || || |||||||| || || || ||||| Sbjct 605 AATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTAT 664 Query 21768 GTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCA 21827 || ||||| ||||||||||| |||||| | ||| ||| | | |||||| || ||| Sbjct 665 GTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTCA 724 Query 21828 CGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAAT 21887 || || | || || || || | ||||||||| |||||||| || ||||||||| Sbjct 725 CGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAAT 784 Query 21888 ACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAAC 21947 || || || ||||| | |||||| || || |||||||| || ||||||||||| ||||| Sbjct 785 ACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAT 844 Query 21948 ACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCC 22007 || | |||| ||||||| || ||| || || || |||||| |||| || || || || Sbjct 845 ACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACCT 904 Query 22008 TGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCA 22067 || |||| || ||||| | ||| ||||| | || || || || ||||| ||||| ||| Sbjct 905 TGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGCA 964 Query 22068 ACAAAGATCCAGGGCCTCATCCCTAGTC-GATAGCTAAGTTCCCACTCTCGTCCCATGTA 22126 ||| |||||| || | ||| |||| | || || ||| ||||||||| || ||||||| Sbjct 965 ACAGCGATCCATGGACGCATACCTAAACGGAAAGATAA-TTCCCACTCACGACCCATGT- 1022 Query 22127 AGCA-AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACA 22185 |||| | || || | |||||||| | ||| | |||||| | ||||| |||||||| | Sbjct 1023 AGCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATA 1082 Query 22186 GCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTAC 22245 ||| || ||||| ||||||||||||||||||||||||||||||| || || || ||| Sbjct 1083 ACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAG 1142 Query 22246 TGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGG 22305 | || | || || |||| |||||||||||||| || | || || |||| || | Sbjct 1143 AAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTG 1202 Query 22306 GTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAG 22365 | || ||||| ||||||||||| || || || || | | || ||||| || || | Sbjct 1203 GCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTG 1262 Query 22366 TTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGT 22425 ||| || | ||| || || || ||||| | || |||||||| || | || | ||||| Sbjct 1263 ATGTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGT 1322 Query 22426 TATTAGTAGAGGTGACCCAGGAACAAAA 22453 | | ||| || |||| ||| |||||| Sbjct 1323 TTTCAGTTGAAGTGATCCACTCACAAAA 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146196037444200