Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6015 664 0.0 seq3788 286 4e-72 >seq6015 Length=1491 Score = 664 bits (736), Expect = 0.0 Identities = 749/994 (75%), Gaps = 14/994 (1%) Strand=Plus/Plus Query 124045 AGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAA 124104 ||| |||| |||||| ||||||||||| || || | || ||||| ||||||||||| || Sbjct 364 AGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 423 Query 124105 GTTTGCTCTGTTTAGAACATCACCCCA--TGTTGGG---ACGATTTTTCCGTTAGCATCA 124159 ||| || | ||| | | || |||| |||| |||| || || || || Sbjct 424 GTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTT---GTGAG--TCT 478 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 |||||||||||||| ||||||||||| || | |||||| ||||| || | | ||| | | Sbjct 479 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAA 538 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||||| | || | ||| || || | |||||||||||||| | | ||| Sbjct 539 GCTGTGAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAG 598 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 |||||||||||||| || |||||||| | |||||| ||||||||||| |||||||| ||| Sbjct 599 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATG 658 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 |||||||||||||||||||| || || ||||| | ||| ||| || | || ||| Sbjct 659 TTGTATGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTT 718 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| | ||||| || || ||||| | ||||| |||||||| |||||||| || || Sbjct 719 GTTTCACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCA 778 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 || || | || || || ||| ||||||||| || ||||| || ||||| ||||| ||| Sbjct 779 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 838 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| |||| ||| |||||||||||||| |||||| | ||||||||||| |||||| Sbjct 839 TGGAATACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAAT 898 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 ||||| || |||| |||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 899 GAACCTTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAG 958 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 ||||||||| |||||| |||||||| ||||| | | | |||| |||||||| | ||| Sbjct 959 TAAGCAACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCC 1018 Query 124700 ATGTATGCTG-AAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATT 124758 ||||| || | | | ||| | ||||||||| ||| | | || ||||||||||| || Sbjct 1019 ATGTA-GCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTT 1077 Query 124759 ATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGC 124818 || ||||| || |||| ||| || |||||||| |||||||||||||||| || ||||| Sbjct 1078 GTATAACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGC 1137 Query 124819 GTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AGAACCCG 124877 ||| || | ||| | || ||||| | ||||||||||||||| || ||||| |||||| | Sbjct 1138 GTTAGAAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTA-AAGAAGAGAACCAG 1196 Query 124878 CTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGA 124937 |||||| || | ||| || ||||| || || || || || || || || || | ||||| Sbjct 1197 ATACTGGCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGA 1256 Query 124938 AACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 | || || ||| || || | || || ||||| | ||||| |||||||| | || | Sbjct 1257 ATACTGATGTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATA 1316 Query 124998 TTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 | ||| | ||||| || | ||||||||| || Sbjct 1317 AACGGTTTTCAGTTGAAGTGATCCACTCACAAAA 1350 >seq3788 Length=5474 Score = 286 bits (316), Expect = 4e-72 Identities = 381/533 (71%), Gaps = 21/533 (4%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 ||| || |||||||| | ||||| |||||||| |||||||| | | || || ||||| Sbjct 2237 TTATAGAGCGTTACCACGCGGTAATACTTCTTCAGGGAATACTAGACGTTCGTGAGGTTG 2296 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 ||| | | |||||| || | || ||||| |||||||| ||||| || |||||||| Sbjct 2297 GTCTTGCGCAGCCATCCAAGCACGGATACCTTCGTTAAGAAGGATGTTTTTAGTATAGAA 2356 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| |||||||| |||||||| || || | || ||||| ||||| ||||| || || | Sbjct 2357 AGTTTCGAACTCAGGGTCTTCAGCAGCACGGATTTCTTGTGATACGAAGTCATAAGCACG 2416 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 |||||||| |||| ||| || | ||||| || |||| | ||| | || ||||| Sbjct 2417 AAGGTTAAGAGCTAAACCAACAACACCTAGAGCACTCATCCAAAGCCCCGTCACGGGAAC 2476 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||| | ||||||||| | | |||||||| || || | |||||| || ||||| Sbjct 2477 TAAAAGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAAAGCTACACCAAAAATTTGTGA 2536 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | ||| ||||| | ||| ||||||||||| |||||||||| | ||| || Sbjct 2537 CCAGAAACGGTTTGCTGTTACCATTGAGTAAGTTTCTTCAGCCTGTGTAGGGTTGAAGGC 2596 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || ||| ||| ||| | ||||| | ||||| Sbjct 2597 ACGGAACGTGTTAG---------CACCGTCACCA------------TCTTCGAATAATGT 2635 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || || ||||| ||||| ||||||| ||| || ||||||| | || || || Sbjct 2636 GTTTTCTACAGTAGCACCGTGAATAGCACATAATAAAGCACCACCTAAAACACCAGCTAC 2695 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATA 123398 |||||||||||| ||||| |||| ||| ||| ||||||||||| | |||| Sbjct 2696 ACCCATCATGTGGAATGGGTTCAGTGTCCAGTTATGGAAACCTTGGAAAAATA 2748 Score = 185 bits (204), Expect = 1e-41 Identities = 342/502 (68%), Gaps = 0/502 (0%) Strand=Plus/Plus Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 |||| |||||||| || ||||| || || || |||||||||| ||||||| || Sbjct 4001 AACGGAAGATTGCAGCTACACCAAAGCTAGGAGCAAAGAACCAACCTGATTGACCTAATG 4060 Query 123465 GATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 | || || || || | | || || | || || ||||| || | ||||| | Sbjct 4061 GGTAAATTAGGAAAACAGCAACAAATACAGAAATTGGCGCTGAGAAAGCAATAGCGTTAT 4120 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 | || | | | ||| | || || ||||| ||||| | ||| || || || | | Sbjct 4121 ATGGACGTAAGTTTACTGAACGAGCAATTTCAAACTGTCTTAACATAAAGCCAATTAATG 4180 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 ||| | || ||||| ||||| || ||||| ||| || ||||| ||||||| || Sbjct 4181 AAAAAGCACCGTGTAAAGCTACGAATGCCCATAAACCACCAAGTTGACACCAACGTGTGA 4240 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||| ||||| || ||||||| || | ||| || |||| || ||| Sbjct 4241 AGTCACCTTGAGCTTCTGGACCCCAAACAAATAGAAGAGAGTGTGCCATACTGTTTGCAG 4300 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 |||| || || ||||| ||||||||||| || || | || |||| || | ||||| Sbjct 4301 GTGTTGATACAGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCAT 4360 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 |||||||||||||||| ||||| || || || ||||||||||| | || | || | Sbjct 4361 GTGTATACCATGATGTTACGAAAGTTGTACCAGTTAACCAACCACCTAGTGCAAAGTAAG 4420 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||||| | |||||| | ||| ||||| |||| ||||| ||||| ||| || || Sbjct 4421 CACAAGGGAAAAGTAATAAACCTGACCAACCTACAAATACGAAACGGTCTTGACGTAGCC 4480 Query 123885 AGTCGTCAAGAACATCAAACCA 123906 |||| ||| |||||||||| Sbjct 4481 AGTCATCAGCGTCATCAAACCA 4502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578948533762800