Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq6015 742 0.0 seq3788 239 6e-58 >seq6015 Length=1491 Score = 742 bits (822), Expect = 0.0 Identities = 752/974 (77%), Gaps = 4/974 (0%) Strand=Plus/Plus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || || || ||||| | ||||| || || || | || | ||||||||||| Sbjct 380 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 439 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | ||||||||||||||| | |||||||| ||||| || | || || || ||||||||| Sbjct 440 ATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAACTGATTGGTTGAAGTTG 499 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 |||||||| || ||||||||||| || || | ||| | || |||||||| || || | | Sbjct 500 AAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGTGAACCAAATACCGATA 559 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||| ||||| ||||||||||| || ||||| ||||||||||||||||| |||||| Sbjct 560 ACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTGG 619 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 ||||| |||||||||||||| || || ||||| ||||||||||| || |||||||||||| Sbjct 620 AAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTATGTTTCTTCTTCTTGA 679 Query 27046 CCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGAT 27105 || || ||||| | ||| ||| || ||||||| || ||||||| | || || Sbjct 680 CCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTCACGGATTAACGATGAA 739 Query 27106 GTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCG 27165 ||||| | |||||||| |||||||| | || ||||| ||||| ||||||||||| Sbjct 740 GTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCAACACCT 799 Query 27166 AGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTA 27225 | ||||||||| |||||||||||||| ||||| || || |||||||| | |||| |||| Sbjct 800 AACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTG 859 Query 27226 AAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAG 27285 |||||||| |||||| | ||||||| |||| ||||| |||||||| || | || || Sbjct 860 AAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACCTTGGCCAATTGGGTAA 919 Query 27286 ACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGA 27345 || | |||||| || || || ||||| |||||||| || || || ||| |||||||||| Sbjct 920 ACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGA 979 Query 27346 CGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCA-TAGATGCCGAT 27404 |||||||||||||| | || | |||||||||||| ||||| | |||| || | || | Sbjct 980 CGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT-AGCAGTATACACCTAA 1038 Query 27405 AAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGA 27464 ||||||||| | || | |||||| ||||||||||||| || |||||||| || || | Sbjct 1039 AAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGT 1098 Query 27465 TGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGC 27524 || |||||||| |||||||||||||| | ||| || || || ||| |||||| || || Sbjct 1099 AGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGATTACAGC 1158 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 ||| | ||||||||||| || || | ||| ||||||| || || ||||| ||||| || Sbjct 1159 ACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTGGCTCACGGATACCATC 1218 Query 27585 AATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACA 27643 || || || || || || |||||||| |||| ||||| | || ||||| | | | Sbjct 1219 GATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTGA-TGTTGCAGTAAGAA 1277 Query 27644 GTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGATGTCA 27703 | |||||||| | ||||||||||||||| | || |||||||| | |||||| || | Sbjct 1278 GACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGTTTTCAGTTGAAGTGA 1337 Query 27704 CCCACTCACAGAAA 27717 ||||||||| ||| Sbjct 1338 TCCACTCACAAAAA 1351 >seq3788 Length=5474 Score = 239 bits (264), Expect = 6e-58 Identities = 338/475 (71%), Gaps = 0/475 (0%) Strand=Plus/Plus Query 23899 GAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTC 23958 ||| ||| | ||| || || || ||||| || || || |||||||||||| ||| || | Sbjct 3995 GAATGAAACGGAAGATTGCAGCTACACCAAAGCTAGGAGCAAAGAACCAACCTGATTGAC 4054 Query 23959 CCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCG 24018 | || || || || ||||| |||| || ||||||| ||| || | || |||||||| | Sbjct 4055 CTAATGGGTAAATTAGGAAAACAGCAACAAATACAGAAATTGGCGCTGAGAAAGCAATAG 4114 Query 24019 CATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTA 24078 | || || ||||| | | | ||| || | ||||||||| | ||||||||| || | Sbjct 4115 CGTTATATGGACGTAAGTTTACTGAACGAGCAATTTCAAACTGTCTTAACATAAAGCCAA 4174 Query 24079 TAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACC 24138 | | || ||| |||||||| | ||| || || | ||| | || |||||||| ||| | Sbjct 4175 TTAATGAAAAAGCACCGTGTAAAGCTACGAATGCCCATAAACCACCAAGTTGACACCAAC 4234 Query 24139 GTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGT 24198 || ||||| ||||||| || |||||||||| | |||||||| || ||||| || Sbjct 4235 GTGTGAAGTCACCTTGAGCTTCTGGACCCCAAACAAATAGAAGAGAGTGTGCCATACTGT 4294 Query 24199 CAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAA 24258 ||||| || || |||||||| || | |||||| ||| || | || ||| |||| | Sbjct 4295 TTGCAGGTGTTGATACAGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTA 4354 Query 24259 GTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAA 24318 ||||| || ||||| || || |||| ||| ||||| | |||||| || | |||| Sbjct 4355 AACCATGTGTATACCATGATGTTACGAAAGTTGTACCAGTTAACCAACCACCTAGTGCAA 4414 Query 24319 GATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATC 24373 |||||| || | ||||| | || |||||||| ||||| || || || || Sbjct 4415 AGTAAGCACAAGGGAAAAGTAATAAACCTGACCAACCTACAAATACGAAACGGTC 4469 Score = 232 bits (256), Expect = 9e-56 Identities = 331/466 (71%), Gaps = 0/466 (0%) Strand=Plus/Plus Query 23435 TTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATT 23494 |||||| |||||||| | |||||| |||||| || | ||| | | || || Sbjct 2285 TTCGTGAGGTTGGTCTTGCGCAGCCATCCAAGCACGGATACCTTCGTTAAGAAGGATGTT 2344 Query 23495 TTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAA 23554 ||| || ||||| || || || | |||||||||||||| || ||||| || || Sbjct 2345 TTTAGTATAGAAAGTTTCGAACTCAGGGTCTTCAGCAGCACGGATTTCTTGTGATACGAA 2404 Query 23555 ATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACC 23614 |||||||||||||| |||||||| | |||| | || | || | | |||||| || Sbjct 2405 GTCATAAGCACGAAGGTTAAGAGCTAAACCAACAACACCTAGAGCACTCATCCAAAGCCC 2464 Query 23615 CATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCC 23674 | | || ||||| || | ||| |||||||| ||||||||||| || || || || || Sbjct 2465 CGTCACGGGAACTAAAAGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAAAGCTACACC 2524 Query 23675 GAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGT 23734 || ||||||||||| ||||| |||||||| ||||| || || || || || |||| || Sbjct 2525 AAAAATTTGTGACCAGAAACGGTTTGCTGTTACCATTGAGTAAGTTTCTTCAGCCTGTGT 2584 Query 23735 GGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGAC 23794 | | ||| || || ||||| || || |||||||| | | ||| || || || Sbjct 2585 AGGGTTGAAGGCACGGAACGTGTTAGCACCGTCACCATCTTCGAATAATGTGTTTTCTAC 2644 Query 23795 AGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCAT 23854 |||| | || ||||||||| | | | || || || | | |||||| || |||||||| Sbjct 2645 AGTAGCACCGTGAATAGCACATAATAAAGCACCACCTAAAACACCAGCTACACCCATCAT 2704 Query 23855 ATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGA 23900 ||||| ||||| || ||||||||||| || || |||| || ||| Sbjct 2705 GTGGAATGGGTTCAGTGTCCAGTTATGGAAACCTTGGAAAAATAGA 2750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665437084294800