Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq32 91.5 2e-13 seq222 89.7 6e-13 >seq32 Length=161680 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||||| |||| | | || ||||| || ||||| ||||| ||||| || |||||| Sbjct 59568 TTCGCCAGGCGCTTGGTGGCATTTGCAGCGGTCGAGGGCATCTTTTTCTCGGGCTCATTC 59509 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| || | ||| | || || || || |||||||| || || ||| |||||||| Sbjct 59508 TGCGCCATCTTCTGGCTCAAAAAACGCGGGCTCATGCCGGGGCTCACCTTTTCAAATGAG 59449 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || |||||||| ||| || ||||| Sbjct 59448 CTCATCTCTCGGGACGAGGGTCTACACTGCGACTTTGC 59411 >seq222 Length=84561 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 53886 TGTTCGATGTTTTCCATCGCGAAGTTAGTGTGACGCTTGTAGACAGCTTGGAAGAAGGTA 53945 || |||||| ||||| || ||||| |||||||| || || | | ||| || || Sbjct 63356 TGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACGACCTTGAAAAACGTG 63415 Query 53946 ACCTTTGGGTTACCAGTCAAGTAGACGTCTTGGGCGCCGTAAGCGACAAGTTGCATGAGA 54005 | || ||||| ||||||| ||||| ||| || || ||||||||||| |||||||| ||| Sbjct 63416 ATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCGACGAGTTGCATTAGA 63475 Query 54006 CCACCGGCCATT 54017 || || ||||| Sbjct 63476 CCGCCACCCATT 63487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596518220443200