Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq6015 607 1e-168 >seq6015 Length=1491 Score = 607 bits (672), Expect = 1e-168 Identities = 707/949 (74%), Gaps = 4/949 (0%) Strand=Plus/Plus Query 7887 AGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAA 7946 ||| |||||||||| ||||||||||| || || | || ||||| |||||||||||||| Sbjct 364 AGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 423 Query 7947 GTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAAC 8006 ||| || | ||| | | ||| |||| || | | ||| | || ||||| Sbjct 424 GTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAAC 483 Query 8007 TGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGT 8066 ||||||||| ||||| || ||||||||||| || ||||| || ||| ||| | || || Sbjct 484 TGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGT 543 Query 8067 TAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT 8126 ||||||| || | |||||| | | ||| ||||||||||| | | | |||||| Sbjct 544 GAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTT 603 Query 8127 AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186 || || || || ||||||||||| | ||| ||||| || ||||| || || || || || Sbjct 604 GAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTA 663 Query 8187 GGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTC 8246 || ||||||||||||||||| ||||| | ||| || || | ||||||||| || Sbjct 664 TGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTC 723 Query 8247 TCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAA 8306 | ||||| || || |||||||| ||||||||||| ||| ||| | ||| ||||| || Sbjct 724 ACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAA 783 Query 8307 CATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAA 8366 | ||| || || ||| ||| ||||| || |||||||| ||||| ||||| |||||||| Sbjct 784 TACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 843 Query 8367 TACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACC 8426 ||||| ||||||||| || ||||| ||||||| |||||| ||||| ||||||||||| Sbjct 844 TACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACC 903 Query 8427 CTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGC 8486 || |||| ||| || |||||||| || ||| ||| |||| ||||||||| || || Sbjct 904 TTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGC 963 Query 8487 TACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTA 8546 ||| ||||||||| | ||||||||| ||| | ||||| ||||||| | |||||||| Sbjct 964 AACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT- 1022 Query 8547 AGCAG-AAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 ||||| | | || | ||||||||| | | | | || || ||||| ||||| || | Sbjct 1023 AGCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATA 1082 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 ||||||| || | || |||||||||||||| || ||||||||||| ||||||||||| | Sbjct 1083 ACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAG 1142 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 ||| ||| | |||||||| | |||||||||||| || || | | ||||| | || | Sbjct 1143 AAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTG 1202 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 | ||||| ||||| ||||| || || || |||||||| || || || | ||| || | Sbjct 1203 GCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTG 1262 Query 8786 TAGCAGCAGCTAACAAG-CAAGGAATCATTAGAACTCCAAACCAACCGA 8833 | |||| ||| ||| ||||| ||||| | || || |||||||||| Sbjct 1263 ATGTTGCAG-TAAGAAGACAAGGGATCATGATTACACCGAACCAACCGA 1310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615809358850800