Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq6015 747 0.0 seq3788 327 1e-84 seq4831 100 3e-16 >seq6015 Length=1491 Score = 747 bits (828), Expect = 0.0 Identities = 744/961 (77%), Gaps = 2/961 (0%) Strand=Plus/Minus Query 165796 AACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACT 165855 |||||| | || |||||||||| ||| | ||||| || ||| | | ||||| Sbjct 1323 AACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATCCCTTGTCTTCTTACTGCAAC- 1265 Query 165856 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 165914 ||| | |||||| |||| |||||||||||||| || || |||||||| || |||||||| Sbjct 1264 ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGA 1205 Query 165915 ACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 165974 || || |||||||||| | || ||||||||||||||| | ||||| || | || | Sbjct 1204 GCCAGTATCTGGTTCTCTTCTTTACGGTAACAACATCATCACAGGTGCTGTAATCCCAAC 1145 Query 165975 TTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATG 166034 ||| ||||| |||||| |||||||||| || || |||||||| || | |||||||| || Sbjct 1144 TTCTAACGCTATTGGTTTACACTTCTACCCAATTTGGGAAGCTGCTACTCTTGACGAGTG 1085 Query 166035 GCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGC 166094 | | || ||||||||||||| |||||| | || | |||||||| | || | || Sbjct 1084 GTTATACAACGGTGGTCCTTACCAACTAATCGTTTGTCACTTCCTTTTAGGTGTATACTG 1025 Query 166095 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 166154 |||||||||||||||||||||| | |||| |||| |||||||||||||||||||| ||| Sbjct 1024 CTACATGGGTCGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGT 965 Query 166155 TGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCA 166214 |||||||||||| ||||| ||||| || || || |||||| |||| || || | || || Sbjct 964 TGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGCTGTATTCTTAGTTTACCCAATTGGCCA 905 Query 166215 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 166274 |||| ||||| |||| ||||| | || ||| || || ||||||| |||| | || Sbjct 904 AGGTTCATTCTCAGATGGTATGCCTTTAGGTATCAGCGGTACTTTCAACTTCATGATCGT 845 Query 166275 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 166334 ||||||||||||||||| || || ||||| || ||||| ||| | || |||||||| || Sbjct 844 ATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGT 785 Query 166335 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 166394 ||||||||| || || ||| |||||||| || |||||||| || | | | Sbjct 784 ATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTTACTTCATCGTTAATCCG 725 Query 166395 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 166454 || || ||||||| |||||| ||| | |||||| || || |||||||||||||| Sbjct 724 TGAAACAACTGAAAACGAATCAGCTAACGAAGGTTACCGTTTTGGTCAAGAAGAAGAAAC 665 Query 166455 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 166514 ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 664 ATACAACATCGTAGCAGCTCACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATT 605 Query 166515 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 166574 ||||||||| || || || ||||||||||| ||||| ||||| ||| |||| || ||||| Sbjct 604 CAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTT 545 Query 166575 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 166634 ||| || | || | || || ||||| |||||||| |||||||||||||||||||| || Sbjct 544 CACAGCTTTAGGTCTTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATC 485 Query 166635 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGG 166694 | | || || |||||||| || ||||| |||||||| | | ||||| ||| Sbjct 484 AGTTGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCAGACATCATCAACCGTGCTAA 425 Query 166695 TCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGC 166754 | ||||||||||| ||||| ||||||||||| ||||||||||| || ||| | ||| | Sbjct 424 CTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 365 Query 166755 T 166755 | Sbjct 364 T 364 >seq3788 Length=5474 Score = 327 bits (362), Expect = 1e-84 Identities = 376/506 (74%), Gaps = 0/506 (0%) Strand=Plus/Minus Query 167525 TCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCC 167584 ||||||| ||||| |||||||||||||| ||||| || |||||||||||||| ||| | Sbjct 2742 TCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTT 2683 Query 167585 TGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 167644 | |||||||| || | | ||| || || |||| ||| ||||| || || || | |||| Sbjct 2682 TAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAG 2623 Query 167645 ATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATT 167704 ||||||| || ||||| || || ||| | |||| |||| ||||| ||||| | Sbjct 2622 ATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACT 2563 Query 167705 CAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAAC 167764 ||||||| ||||||||||| |||||||| || || || || | |||||| ||||| | Sbjct 2562 CAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGC 2503 Query 167765 GCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTG 167824 | ||| | || ||||| ||| | || |||||||| | ||| ||||||| | | | Sbjct 2502 GTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAG 2443 Query 167825 GCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAG 167884 | | ||||| | |||||||| ||||||||||| || ||||| || ||||| ||| | | Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 167885 CGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTC 167944 | || || || || ||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 167945 TTCGAGCATGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAG 168004 | || || ||| | || | || |||||||| || | || ||||| || |||| Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAG 2263 Query 168005 TTCTCCCACGAGGCAACGCACTATAA 168030 | | || || || ||||| |||||| Sbjct 2262 TATTACCGCGTGGTAACGCTCTATAA 2237 Score = 187 bits (206), Expect = 3e-42 Identities = 349/511 (68%), Gaps = 14/511 (3%) Strand=Plus/Minus Query 167011 TGGTTTGATGTCCTCGATGACTGGCT---TAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 |||||||||| | ||||||||||| | || || ||||| || ||||| || ||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAA---GACCGTTTCGTATTTGTAGGTTGG 4446 Query 167068 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 167127 || || | | ||||| || |||||| |||| | || |||||| | ||||| || Sbjct 4445 TCAGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACA 4386 Query 167128 ACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAAC 167187 |||||||| || |||||||| ||||| | || | ||| | || ||| ||| Sbjct 4385 ACTTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAAC 4326 Query 167188 TTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTA 167247 || | ||||| || || || || ||| | ||||| || ||| | || || | Sbjct 4325 TTCTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTT 4266 Query 167248 TGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCT 167307 |||||||| ||| ||||||| || ||| | ||| |||||||| || | ||||| Sbjct 4265 TGGGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCA 4206 Query 167308 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTT 167367 || || || | ||||| || ||| | | ||||| || ||| | ||||||||||| || Sbjct 4205 TTCGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATT 4146 Query 167368 GCTCGCCTGATTGGTA----TCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGC 167423 |||| | | ||| | ||||| || || |||||||||||||| | || ||| | Sbjct 4145 GCTC----GTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTC 4090 Query 167424 TGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCC 167483 ||| || ||| |||||||| | || || | |||||| | ||||||||||| || Sbjct 4089 TGTATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCC 4030 Query 167484 GTCCTTCGGAGTCGCCGCCATCTTCCGATTC 167514 ||| || || || || |||||||| ||| Sbjct 4029 TAGCTTTGGTGTAGCTGCAATCTTCCGTTTC 3999 >seq4831 Length=2924 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 || |||||||||||| || ||||| |||| ||||||| ||||||||||||||||||| || Sbjct 1641 TCTTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 1700 Query 18189 CTACCTGGGGAGT 18201 ||||||||||||| Sbjct 1701 CTACCTGGGGAGT 1713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561199662516000