Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2872 113 6e-20 seq222 111 2e-19 seq2126 98.7 1e-15 seq4034 93.3 6e-14 seq1357 93.3 6e-14 seq323 87.8 2e-12 >seq2872 Length=9955 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 196289 GTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTT 196347 || || || || || ||||||||||| || ||| |||| ||| |||| | || |||||| Sbjct 3278 GTACTGGTTGGCGGCTCAACCCGTATCCCCAAGGTTCAGCAGCTGCTG-CAAGACTTCTT 3220 Query 196348 CAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGC 196407 || || || | ||||| | |||||||| ||||| || || || ||||| || || Sbjct 3219 TAACGGAAAGGAACTCAACAAGAGCATCAACCCTGATGAGGCCGTCGCCTATGGCGCTGC 3160 Query 196408 CGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACT 196467 ||||||||| || || || | || | | | | || || || || || ||||| || Sbjct 3159 CGTTCAGGCCGCCATCCTGACCGGCGAGGGCGGCGAGAAGGTGCAGGACCTGCTGCTGCT 3100 Query 196468 TGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATG 196516 |||||| | ||| | || |||||||| || || || ||||| |||||| Sbjct 3099 TGATGTCACCCCCCTGTCTCTGGGTCTGGAGACGGCTGGTGGCGTTATG 3051 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 ||||||||| || || || || || || || || | || ||||||||| | | || || Sbjct 2658 CTTCGATATCGATGCCAACGGTATCCTCAATGTGTCCGCGGAGGACAAGACGACGGGTAA 2599 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 | ||||| |||||| ||||||||||| ||| | || |||||||| ||||| || Sbjct 2598 CAAGAACAAGATCACGATTACGAATGACAAGGGCCGGTTGTCCAAGGAGGAGATTGAGCG 2539 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 |||||| || || || || ||||||| || || || ||| Sbjct 2538 TATGGTGCAGGAAGCTGAGAAGTACAAGGCGGATGATGAG 2499 >seq222 Length=84561 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 53332 TGTTCGATGTTCTCCATCGCGAAGTTAGTGTGACGCTTGTAGACAGCCTGGAAAAAAGTA 53391 || |||||| |||||| || ||||| |||||||| || || ||| |||||| || Sbjct 63356 TGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACGACCTTGAAAAACGTG 63415 Query 53392 ACCTTGGGGTTACCAGTCAGGTACACGTCTTGCGCGCCGTACGCTACGAGTTGCATAAGT 53451 | || |||||| ||||||||||| | ||| || || ||||| || ||||||||||| || Sbjct 63416 ATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCGACGAGTTGCATTAGA 63475 Query 53452 CCGCCAGCCATTTT 53465 |||||| ||||||| Sbjct 63476 CCGCCACCCATTTT 63489 >seq2126 Length=15993 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || |||||||| |||||||| ||||| || Sbjct 728 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACGCTCGAGGTGGAGTCCTCG 669 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 668 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 625 >seq4034 Length=4767 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || |||||||| || || || ||||| || || || || |||||| Sbjct 1649 ATGCAAATATTCGTTAAGACCCTTACCGGGAAGACGATCACTCTTGAAGTGGAATCGTCA 1708 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 |||||||| || ||| |||| || || |||||||| || ||||| Sbjct 1709 GACACAATAGAGAACGTCAAGGCGAAAATTCAAGACAAAGAAGG 1752 >seq1357 Length=27981 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| ||||| || || || || |||||||||||||| |||||||| Sbjct 4433 ATGCAGATATTTGTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCGTCG 4374 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || || ||||| || || ||||| || Sbjct 4373 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGG 4330 >seq323 Length=72675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 195609 ACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGA 195668 |||| ||| |||| ||| |||||| || || || ||||| | | ||||||| Sbjct 39545 ACGGCGAGCAGAAGGCGTTTAGTCCCGAGGAGATCTCCGCTATGATTCTTCAGAAGATGA 39604 Query 195669 AGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTG 195728 |||| || || || | ||| | || || || || || | || || ||||| || || | Sbjct 39605 AGGACACCGCTGAGGCCTTCCTCGGCAAGACCGTCAAGCACGCTGTCGTGACGGTGCCCG 39664 Query 195729 CTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAA 195788 | ||||||| || | || || ||||| || |||||||| | | | || |||| || | Sbjct 39665 CGTACTTCAACGACGCCCAGCGCCAGGCCACCAAGGACGCCGGTACCATCTCGGGCCTGA 39724 Query 195789 ACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGA 195848 || | | || ||||| || || || || || || || || || || |||||||||| Sbjct 39725 ACGTGGTGCGCATCATCAACGAGCCTACCGCCGCCGCTATCGCCTACGGCCTGGACAAGA 39784 Query 195849 A 195849 | Sbjct 39785 A 39785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657805741600800