Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq6015 580 3e-161 >seq6015 Length=1491 Score = 580 bits (642), Expect = 3e-161 Identities = 727/991 (73%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | ||||| ||| | |||||| | || | || ||||| Sbjct 1359 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 1300 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 ||||| | ||||| || ||||| || |||| || | | || || || |||||||||| Sbjct 1299 GGTGTAATCATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCAT 1241 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||| || || |||||||| ||||| || ||||| || || ||||| |||||||| || Sbjct 1240 CGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTA 1181 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||||||| | ||||| || | || | |||||| ||||| |||| || Sbjct 1180 CGGTAACAACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTT 1121 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| ||| |||||||| ||| | ||||| || || ||||| || Sbjct 1120 CTACCCAATTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCA 1061 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || |||| | ||||||||| | ||| | | || ||| |||| || || |||||| | Sbjct 1060 ACTAATCGTTTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATT 1001 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 || | ||| | || ||| | || |||||| |||||||||||| || || || ||||| Sbjct 1000 ATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGC 941 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 ||| | || || ||| | || || ||| |||| |||||||| || |||||||| ||||| Sbjct 940 AGCTAGCGCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCC 881 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || || |||||| |||||||||||| | || ||||| ||||| || ||||| || Sbjct 880 TTTAGGTATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCT 821 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||| | |||||||| || ||||||||||| || || ||||| || Sbjct 820 TATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGC 761 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGC 42936 ||||| ||| | || || || || | | |||||||| |||||||||||| ||| Sbjct 760 AATGCACGGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGC 701 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 || | || ||| || |||||||| || || || || ||||| || ||||| || Sbjct 700 --TAACGAAGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCAC 643 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCAC 43056 |||||||| || || | ||||||||||| || || || || || ||| || || ||| Sbjct 642 GGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 583 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| ||| | || ||||||||||| || | || | ||| Sbjct 582 TTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACT 523 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TC 43174 ||||| || ||| | || ||||| ||||| ||||||||| |||| | | ||| || || Sbjct 522 ATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGT--AGACTCACAAGGTC 465 Query 43175 ATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGC 43234 ||| | |||||||| || || | || ||||| ||| | || | || || |||| Sbjct 464 GTGTATTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 405 Query 43235 ACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 ||||||| || || || |||||||| || || Sbjct 404 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143521056325720