Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq6015 470 4e-128 >seq6015 Length=1491 Score = 470 bits (520), Expect = 4e-128 Identities = 701/991 (71%), Gaps = 4/991 (0%) Strand=Plus/Plus Query 25871 GATGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCG 25930 || || |||||||| || || ||||| ||||| |||||||||||||| ||||| | || Sbjct 362 GAAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCT 421 Query 25931 AGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACT 25990 | |||||| ||||| | | || ||||| || || || || | ||||| Sbjct 422 AAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACA 481 Query 25991 ACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGAT 26050 ||||| ||||| ||||| ||||| || ||||| || ||||| || | | ||| | || | Sbjct 482 ACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCT 541 Query 26051 GTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTA 26110 || | ||| || || | ||| ||||||| ||| || ||||| || | ||||| ||| Sbjct 542 GTGAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTG 601 Query 26111 TTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTA 26170 || || || || || || ||||| | || ||||| ||||| || || || || || Sbjct 602 TTGAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTG 661 Query 26171 TATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTT 26230 ||||| ||||| ||||| ||||| || || | || ||| | | || || ||| Sbjct 662 TATGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTT 721 Query 26231 TCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCG 26290 || || | || |||||||| || |||||||| |||| ||| | | ||||| Sbjct 722 TCACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCA 781 Query 26291 AAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGG 26350 || || ||||||||||| ||| |||||||||||||| || || || || || |||||| Sbjct 782 AATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGG 841 Query 26351 AATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTC 26410 ||||||| ||| ||||| |||||||| |||||| | |||||| ||||| || Sbjct 842 AATACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAA 901 Query 26411 CCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATAT 26470 ||||| || | || ||||||||||| || ||| |||||| | || ||| |||| || Sbjct 902 CCTTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAA 961 Query 26471 GCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCA 26530 |||||| |||||||| | ||| |||| | | |||||| |||||||| | || || Sbjct 962 GCAACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACC--CA 1019 Query 26531 TAT-GCTG-CTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGT 26588 | | || | ||| |||| | |||||| | | || ||||| || || || || |||| Sbjct 1020 TGTAGCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGT 1079 Query 26589 ATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGT 26648 ||| ||||||||| || || |||||||||| || ||||| || |||| || || |||| Sbjct 1080 ATAACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGT 1139 Query 26649 TAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAA 26708 |||| | |||| || || |||| || || ||||| ||||| | | || || || | Sbjct 1140 TAGAAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATA 1199 Query 26709 CTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAAC 26768 |||||||||| || ||||| || ||||| ||||| || |||||||| || | || || Sbjct 1200 CTGGCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATA 1259 Query 26769 ATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGAC 26828 || || || | || | || || ||||| | || |||||||| || | || | || Sbjct 1260 CTGATGTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAAC 1319 Query 26829 GGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||| ||||| || | |||||||||||| Sbjct 1320 GGTTTTCAGTTGAAGTGATCCACTCACAAAA 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147699914388800